Additional feedforward mechanism of Parkin activation via binding of phospho-UBL and RING0 in trans
Lenka, D., Dahe, S., Antico, O., Sahoo, P., Prescott, A.R., Muqit, M.M.K., Kumar, A.(2024) Elife 
Experimental Data Snapshot
Starting Model: experimental
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(2024) Elife 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase parkin | 312 | Homo sapiens | Mutation(s): 1  Gene Names: PRKN, PARK2 EC: 2.3.2.31 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60260 (Homo sapiens) Explore O60260  Go to UniProtKB:  O60260 | |||||
PHAROS:  O60260 GTEx:  ENSG00000185345  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60260 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | 75 | Homo sapiens | Mutation(s): 0  Gene Names: UBA52, UBCEP2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62987 (Homo sapiens) Explore P62987  Go to UniProtKB:  P62987 | |||||
PHAROS:  P62987 GTEx:  ENSG00000221983  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62987 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase parkin | 76 | Homo sapiens | Mutation(s): 0  Gene Names: PRKN, PARK2 EC: 2.3.2.31 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60260 (Homo sapiens) Explore O60260  Go to UniProtKB:  O60260 | |||||
PHAROS:  O60260 GTEx:  ENSG00000185345  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60260 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD (Subject of Investigation/LOI) Query on MPD | K [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
GOL (Subject of Investigation/LOI) Query on GOL | J [auth A], M [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
3CN (Subject of Investigation/LOI) Query on 3CN | L [auth B] | 3-AMINOPROPANE C3 H9 N WGYKZJWCGVVSQN-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | B | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 82.764 | α = 90 |
b = 82.764 | β = 90 |
c = 103.494 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Department of Biotechnology (DBT, India) | India | Innovative Young Biotechnology Award (DBT/12/IYBAl2019/03) and Ramalingaswami Fellowship (DBT/RLF/Re-entry/42/2019) |