8HAT

NARROW LEAF 1-open from Japonica

PDB DOI: https://doi.org/10.2210/pdb8HAT/pdb
EM Map EMD-34608: EMDB EMDataResource

Classification: SURFACTANT PROTEIN
Organism(s): Oryza sativa Japonica Group
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-10-26 Released: 2024-06-12
Deposition Author(s): Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

NARROW LEAF 1-open from Japonica

Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.

To be published.

Macromolecule Content

Total Structure Weight: 268.1 kDa
Atom Count: 16,967
Modelled Residue Count: 2,206
Deposited Residue Count: 2,454
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein NARROW LEAF 1	A [auth F] B [auth D] C [auth E] D [auth A] E [auth B] A [auth F], B [auth D], C [auth E], D [auth A], E [auth B], F [auth C]	409	Oryza sativa Japonica Group	Mutation(s): 0 Gene Names: NAL1, GFP, LSCHL4, SPIKE, Os04g0615000, LOC_Os04g52479, OsJ_16147
UniProt
Find proteins for B4XT64 (Oryza sativa subsp. japonica) Explore B4XT64 Go to UniProtKB: B4XT64
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B4XT64
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.0.2
MODEL REFINEMENT	cryoSPARC	4.0.2

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-12

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	XDA24020103-2

Revision History (Full details and data files)

Version 1.0: 2024-06-12
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.