8HAT | pdb_00008hat

NARROW LEAF 1-open from Japonica

PDB DOI: https://doi.org/10.2210/pdb8HAT/pdb
EM Map EMD-34608: EMDB EMDataResource

Classification: SURFACTANT PROTEIN
Organism(s): Oryza sativa Japonica Group
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-10-26 Released: 2024-06-12
Deposition Author(s): Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8HAT

This is version 1.1 of the entry. See complete history.

Literature

NARROW LEAF 1-open from Japonica

Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.

To be published.

Macromolecule Content

Total Structure Weight: 268.1 kDa
Atom Count: 16,967
Modeled Residue Count: 2,206
Deposited Residue Count: 2,454
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein NARROW LEAF 1	A [auth F] B [auth D] C [auth E] D [auth A] E [auth B] A [auth F], B [auth D], C [auth E], D [auth A], E [auth B], F [auth C]	409	Oryza sativa Japonica Group	Mutation(s): 0 Gene Names: NAL1, GFP, LSCHL4, SPIKE, Os04g0615000, LOC_Os04g52479, OsJ_16147
UniProt
Find proteins for B4XT64 (Oryza sativa subsp. japonica) Explore B4XT64 Go to UniProtKB: B4XT64
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B4XT64
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.0.2
MODEL REFINEMENT	cryoSPARC	4.0.2
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-06-12

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	XDA24020103-2

Revision History (Full details and data files)

Version 1.0: 2024-06-12
Type: Initial release
Version 1.1: 2025-07-23
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.