8GRJ

Deposited: 2022-09-01 Released: 2023-09-06
Deposition Author(s): Yoshida, H., Kojima, K., Tsugawa, W., Okuda-Shimazaki, J., Kerrigan, J.A., Sode, K.
Funding Organization(s): Other private

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
twin-arginine translocation pathway signal	A, C	168	Burkholderia cepacia	Mutation(s): 0 Gene Names: BMULJ_04411
UniProt
Find proteins for A0A0H3KLY3 (Burkholderia multivorans (strain ATCC 17616 / 249)) Explore A0A0H3KLY3 Go to UniProtKB: A0A0H3KLY3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3KLY3
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucose dehydrogenase	B, D	545	Burkholderia cepacia	Mutation(s): 0 Gene Names: gdhAlpha
UniProt
Find proteins for Q8GQE7 (Burkholderia cepacia) Explore Q8GQE7 Go to UniProtKB: Q8GQE7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8GQE7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD Query on FAD Download Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain H [auth D] MOL2 format, chain E [auth B] MOL2 format, chain H [auth D]	E [auth B], H [auth D]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain E [auth B] Focus chain H [auth D] Interactions & Density Focus chain E [auth B] Focus chain H [auth D]
F3S Query on F3S Download Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain I [auth D] MOL2 format, chain F [auth B] MOL2 format, chain I [auth D]	F [auth B], I [auth D]	FE3-S4 CLUSTER Fe₃ S₄ FCXHZBQOKRZXKS-UHFFFAOYSA-N		Interactions Focus chain F [auth B] Focus chain I [auth D] Interactions & Density Focus chain F [auth B] Focus chain I [auth D]
LGC (Subject of Investigation/LOI) Query on LGC Download Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain J [auth D] MOL2 format, chain G [auth B] MOL2 format, chain J [auth D]	G [auth B], J [auth D]	D-glucono-1,5-lactone C₆ H₁₀ O₆ PHOQVHQSTUBQQK-SQOUGZDYSA-N		Interactions Focus chain G [auth B] Focus chain J [auth D] Interactions & Density Focus chain G [auth B] Focus chain J [auth D]