8GL8

The Type 9 Secretion System Extended Translocon - SprA-PorV-PPI-RemZ-SkpA-SprE complex

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Flavobacterium johnsoniae
  • Mutation(s): No 

  • Deposited: 2023-03-21 Released: 2024-01-31 
  • Deposition Author(s): Deme, J.C., Lea, S.M.
  • Funding Organization(s): Wellcome Trust, European Research Council (ERC), Biotechnology and Biological Sciences Research Council (BBSRC), Medical Research Council (MRC, United Kingdom), National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

The Type 9 Secretion System caught in the act of transport

Lauber, F., Deme, J.C., Liu, X., Kjaer, A., Miller, H.L., Alcock, F., Lea, S.M., Berks, B.C.

(2024) Nat Microbiol 


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein involved in gliding motility SprA2,403Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A0A1M5G5I4 (Flavobacterium johnsoniae)
Explore A0A1M5G5I4 
Go to UniProtKB:  A0A1M5G5I4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1M5G5I4
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomerase176Flavobacterium johnsoniaeMutation(s): 0 
EC: 5.2.1.8
UniProt
Find proteins for A5F9W9 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101))
Explore A5F9W9 
Go to UniProtKB:  A5F9W9
Entity Groups  
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UniProt GroupA5F9W9
Sequence Annotations
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Type IX secretion system protein PorV domain-containing proteinC [auth F]402Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A5FJM7 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101))
Explore A5FJM7 
Go to UniProtKB:  A5FJM7
Entity Groups  
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UniProt GroupA5FJM7
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RemZ1,114Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A5FLT3 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101))
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Go to UniProtKB:  A5FLT3
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UniProt GroupA5FLT3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Periplasmic chaperone for outer membrane proteins SkpE [auth G],
F [auth C],
G [auth E]		341Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A0A1M5G3C1 (Flavobacterium johnsoniae)
Explore A0A1M5G3C1 
Go to UniProtKB:  A0A1M5G3C1
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UniProt GroupA0A1M5G3C1
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
SprEH [auth I]870Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A1E5T9 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101))
Explore A1E5T9 
Go to UniProtKB:  A1E5T9
Entity Groups  
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UniProt GroupA1E5T9
Glycosylation
Glycosylation Sites: 5
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
LMN
Query on LMN
Download Ideal Coordinates CCD File 
I [auth A]Lauryl Maltose Neopentyl Glycol
C47 H88 O22
MADJBYLAYPCCOO-XYPZXBMFSA-N
MAN
Query on MAN
Download Ideal Coordinates CCD File 
J [auth I]
K [auth I]
L [auth I]
M [auth I]
N [auth I]
J [auth I],
K [auth I],
L [auth I],
M [auth I],
N [auth I],
O [auth I]
alpha-D-mannopyranose
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom219477/Z/19/Z
Wellcome TrustUnited Kingdom107929/Z/15/Z
European Research Council (ERC)European Union833713
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S007474/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/S021264/1
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCCR Core Funding for Lea Group

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-31
    Type: Initial release