8FX5

Human M4 muscarinic acetylcholine receptor complex with Gi1 and xanomeline


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.45 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Xanomeline displays concomitant orthosteric and allosteric binding modes at the M 4 mAChR.

Burger, W.A.C.Pham, V.Vuckovic, Z.Powers, A.S.Mobbs, J.I.Laloudakis, Y.Glukhova, A.Wootten, D.Tobin, A.B.Sexton, P.M.Paul, S.M.Felder, C.C.Danev, R.Dror, R.O.Christopoulos, A.Valant, C.Thal, D.M.

(2023) Nat Commun 14: 5440-5440

  • DOI: https://doi.org/10.1038/s41467-023-41199-5
  • Primary Citation of Related Structures:  
    8FX5

  • PubMed Abstract: 

    The M 4 muscarinic acetylcholine receptor (M 4 mAChR) has emerged as a drug target of high therapeutic interest due to its expression in regions of the brain involved in the regulation of psychosis, cognition, and addiction. The mAChR agonist, xanomeline, has provided significant improvement in the Positive and Negative Symptom Scale (PANSS) scores in a Phase II clinical trial for the treatment of patients suffering from schizophrenia. Here we report the active state cryo-EM structure of xanomeline bound to the human M 4 mAChR in complex with the heterotrimeric G i1 transducer protein. Unexpectedly, two molecules of xanomeline were found to concomitantly bind to the monomeric M 4 mAChR, with one molecule bound in the orthosteric (acetylcholine-binding) site and a second molecule in an extracellular vestibular allosteric site. Molecular dynamic simulations supports the structural findings, and pharmacological validation confirmed that xanomeline acts as a dual orthosteric and allosteric ligand at the human M 4 mAChR. These findings provide a basis for further understanding xanomeline's complex pharmacology and highlight the myriad of ways through which clinically relevant ligands can bind to and regulate GPCRs.


  • Organizational Affiliation

    Drug Discovery Biology, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, VIC, 3052, Australia.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Muscarinic acetylcholine receptor M4A [auth R]349Homo sapiensMutation(s): 0 
Gene Names: CHRM4
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P08173 (Homo sapiens)
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Go to UniProtKB:  P08173
PHAROS:  P08173
GTEx:  ENSG00000180720 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08173
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1349Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
Explore P62873 
Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]70Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
Explore P59768 
Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody fragment scFv16D [auth H]248Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1E [auth A]354Mus musculusMutation(s): 4 
Gene Names: Gnai1Gnai-1
EC: 3.6.5
Membrane Entity: Yes 
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Find proteins for B2RSH2 (Mus musculus)
Explore B2RSH2 
Go to UniProtKB:  B2RSH2
IMPC:  MGI:95771
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UniProt GroupB2RSH2
Sequence Annotations
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  • Reference Sequence
Small Molecules
Binding Affinity Annotations 
IDSourceBinding Affinity
XNO BindingDB:  8FX5 Ki: min: 11, max: 72 (nM) from 3 assay(s)
IC50: min: 9.7, max: 25 (nM) from 2 assay(s)
EC50: min: 6, max: 6310 (nM) from 7 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.45 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom201529/Z/16/Z
National Health and Medical Research Council (NHMRC, Australia)Australia1055134
National Health and Medical Research Council (NHMRC, Australia)Australia1150083
National Health and Medical Research Council (NHMRC, Australia)Australia1138448
Australian Research Council (ARC)AustraliaDE170100152
Australian Research Council (ARC)AustraliaIC200100052
Japan Science and TechnologyJapan18069571

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-13
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Structure summary