8FHA | pdb_00008fha

Intramolecular ester bond-containing repeat domain 1 from Suipraoptans intestinalis adhesin

PDB DOI: https://doi.org/10.2210/pdb8FHA/pdb

Classification: CELL ADHESION
Organism(s): Suipraeoptans intestinalis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-12-13 Released: 2024-06-19
Deposition Author(s): Jin, S., Young, P.G., Squire, C.J.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free:
0.212 (Depositor), 0.219 (DCC)
R-Value Work:
0.166 (Depositor), 0.175 (DCC)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8FHA

This is version 1.1 of the entry. See complete history.

Literature

Intramolecular ester bond-containing repeat domain from Suipraoptans intestinalis adhesin

Jin, S., Young, P.G., Squire, C.J.

To be published.

Macromolecule Content

Total Structure Weight: 64.53 kDa
Atom Count: 4,457
Modeled Residue Count: 571
Deposited Residue Count: 608
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adhesin	A, B, C, D	152	Suipraeoptans intestinalis	Mutation(s): 0 Gene Names: FYJ34_05395
UniProt
Find proteins for A0A6N7UZI9 (Suipraeoptans intestinalis) Explore A0A6N7UZI9 Go to UniProtKB: A0A6N7UZI9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A6N7UZI9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download:Ideal Coordinates CCD File SDF format, chain M [auth D] SDF format, chain K [auth C] SDF format, chain G [auth B] SDF format, chain E [auth A] MOL2 format, chain M [auth D] MOL2 format, chain K [auth C] MOL2 format, chain G [auth B] MOL2 format, chain E [auth A] mmCIF format, chain M [auth D] mmCIF format, chain K [auth C] mmCIF format, chain G [auth B] mmCIF format, chain E [auth A]	E [auth A], G [auth B], K [auth C], M [auth D]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain K [auth C] Focus chain M [auth D] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain K [auth C] Focus chain M [auth D]
NA (Subject of Investigation/LOI) Query on NA Download:Ideal Coordinates CCD File SDF format, chain N [auth D] SDF format, chain L [auth C] SDF format, chain J [auth C] SDF format, chain I [auth B] SDF format, chain H [auth B] SDF format, chain F [auth A] MOL2 format, chain N [auth D] MOL2 format, chain L [auth C] MOL2 format, chain J [auth C] MOL2 format, chain I [auth B] MOL2 format, chain H [auth B] MOL2 format, chain F [auth A] mmCIF format, chain N [auth D] mmCIF format, chain L [auth C] mmCIF format, chain J [auth C] mmCIF format, chain I [auth B] mmCIF format, chain H [auth B] mmCIF format, chain F [auth A]	F [auth A] H [auth B] I [auth B] J [auth C] L [auth C] F [auth A], H [auth B], I [auth B], J [auth C], L [auth C], N [auth D]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth C] Focus chain L [auth C] Focus chain N [auth D] Interactions & Density Focus chain F [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth C] Focus chain L [auth C] Focus chain N [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.212 (Depositor), 0.219 (DCC)
R-Value Work: 0.166 (Depositor), 0.175 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.051	α = 90
b = 104.712	β = 91.81
c = 52.587	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-06-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-06-19
Type: Initial release
Version 1.1: 2024-11-13
Changes: Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.