8EP5 | pdb_00008ep5

Solution NMR structure of a computationally designed mastoparan-like peptide, mastoparan-R1

PDB DOI: https://doi.org/10.2210/pdb8EP5/pdb
BMRB: 31045

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Vespula lewisii
Mutation(s): Yes

Deposited: 2022-10-05 Released: 2023-10-18
Deposition Author(s): Freitas, C.D.P., Oshiro, K.G.N., Macedo, M.L.R., Cardoso, M.H., Franco, O.L., Liao, L.M.
Funding Organization(s): Brazilian National Council for Scientific and Technological Development (CNPq)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 8EP5

This is version 1.1 of the entry. See complete history.

Literature

Solution NMR structure of a computationally designed mastoparan-like peptide, mastoparan-R1.

Freitas, C.D.P., Oshiro, K.G.N., Macedo, M.L.R., Cardoso, M.H., Franco, O.L., Liao, L.M.

To be published.

Macromolecule Content

Total Structure Weight: 1.64 kDa
Atom Count: 115
Modeled Residue Count: 15
Deposited Residue Count: 15
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mastoparan-R1 peptide	A [auth B]	15	Vespula lewisii	Mutation(s): 6
UniProt
Find proteins for P01514 (Vespula lewisii) Explore P01514 Go to UniProtKB: P01514
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01514
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-10-18

Deposition Author(s):

Freitas, C.D.P.

Funding Organization	Location	Grant Number
Brazilian National Council for Scientific and Technological Development (CNPq)	Brazil	--

Revision History (Full details and data files)

Version 1.0: 2023-10-18
Type: Initial release
Version 1.1: 2024-11-13
Changes: Database references, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.