Structure of C. elegans UNC-6/Netrin LamN and 3 EGF Domains
Priest, J.M., Ozkan, E.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Netrin unc-6 | 449 | Caenorhabditis elegans | Mutation(s): 0  Gene Names: unc-6, unc-106, F41C6.1 | ||
UniProt | |||||
Find proteins for P34710 (Caenorhabditis elegans) Explore P34710  Go to UniProtKB:  P34710 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P34710 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | B | 6 | N/A | N-Glycosylation | |
Glycosylation Resources | |||||
GlyTouCan:  G88303DD GlyCosmos:  G88303DD GlyGen:  G88303DD |
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 (Subject of Investigation/LOI) Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 70.243 | α = 90 |
b = 70.243 | β = 90 |
c = 287.353 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
PHENIX | refinement |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) | United States | R01 NS097161 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | T32 GM138826 |