8E2K

Cryo-EM structure of BIRC6/HtrA2-S306A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.21 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structures of BIRC6-client complexes provide a mechanism of SMAC-mediated release of caspases.

Hunkeler, M.Jin, C.Y.Fischer, E.S.

(2023) Science 379: 1105-1111

  • DOI: https://doi.org/10.1126/science.ade5750
  • Primary Citation of Related Structures:  
    8E2D, 8E2E, 8E2F, 8E2G, 8E2H, 8E2I, 8E2J, 8E2K

  • PubMed Abstract: 

    Tight regulation of apoptosis is essential for metazoan development and prevents diseases such as cancer and neurodegeneration. Caspase activation is central to apoptosis, and inhibitor of apoptosis proteins (IAPs) are the principal actors that restrain caspase activity and are therefore attractive therapeutic targets. IAPs, in turn, are regulated by mitochondria-derived proapoptotic factors such as SMAC and HTRA2. Through a series of cryo-electron microscopy structures of full-length human baculoviral IAP repeat-containing protein 6 (BIRC6) bound to SMAC, caspases, and HTRA2, we provide a molecular understanding for BIRC6-mediated caspase inhibition and its release by SMAC. The architecture of BIRC6, together with near-irreversible binding of SMAC, elucidates how the IAP inhibitor SMAC can effectively control a processive ubiquitin ligase to respond to apoptotic stimuli.


  • Organizational Affiliation

    Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Baculoviral IAP repeat-containing protein 6
A, B
4,898Homo sapiensMutation(s): 0 
Gene Names: BIRC6KIAA1289
EC: 6 (PDB Primary Data), 2.3.2.27 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NR09 (Homo sapiens)
Explore Q9NR09 
Go to UniProtKB:  Q9NR09
PHAROS:  Q9NR09
GTEx:  ENSG00000115760 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NR09
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Serine protease HTRA2, mitochondrialC [auth X],
D [auth Y],
E [auth Z]
332Homo sapiensMutation(s): 0 
Gene Names: HTRA2OMIPRSS25
EC: 3.4.21.108
UniProt & NIH Common Fund Data Resources
Find proteins for O43464 (Homo sapiens)
Explore O43464 
Go to UniProtKB:  O43464
PHAROS:  O43464
GTEx:  ENSG00000115317 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO43464
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.21 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTCoot
MODEL REFINEMENTPHENIX
MODEL REFINEMENTISOLDE
MODEL REFINEMENTUCSF ChimeraX
MODEL REFINEMENTUCSF Chimera
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCA066996
The Mark FoundationUnited States19-001-ELA

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-15
    Type: Initial release
  • Version 1.1: 2023-02-22
    Changes: Database references
  • Version 1.2: 2023-03-29
    Changes: Database references
  • Version 1.3: 2024-06-12
    Changes: Data collection