Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 1 | A [auth a] | 534 | Saccharomyces cerevisiae | Mutation(s): 0  EC: 7.1.1.9 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P00401 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00401  Go to UniProtKB:  P00401 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00401 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 2 | B [auth b] | 236 | Saccharomyces cerevisiae | Mutation(s): 0  EC: 7.1.1.9 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P00410 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00410  Go to UniProtKB:  P00410 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00410 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 3 | C [auth c] | 269 | Saccharomyces cerevisiae | Mutation(s): 0  EC: 7.1.1.9 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P00420 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00420  Go to UniProtKB:  P00420 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00420 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 4, mitochondrial | D [auth d] | 130 | Saccharomyces cerevisiae | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P04037 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04037  Go to UniProtKB:  P04037 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04037 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 5A, mitochondrial | E [auth e] | 133 | Saccharomyces cerevisiae | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P00424 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00424  Go to UniProtKB:  P00424 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00424 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 6, mitochondrial | F [auth f] | 108 | Saccharomyces cerevisiae | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P00427 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00427  Go to UniProtKB:  P00427 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00427 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 7, mitochondrial | G [auth g] | 59 | Saccharomyces cerevisiae | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P10174 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10174  Go to UniProtKB:  P10174 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P10174 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 8, mitochondrial | H [auth h] | 51 | Saccharomyces cerevisiae | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P04039 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04039  Go to UniProtKB:  P04039 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04039 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c oxidase subunit 9, mitochondrial | I [auth i] | 55 | Saccharomyces cerevisiae | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P07255 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P07255  Go to UniProtKB:  P07255 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P07255 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEA Query on HEA | M [auth a], N [auth a] | HEME-A C49 H56 Fe N4 O6 ZGGYGTCPXNDTRV-PRYGPKJJSA-L | |||
PEF Query on PEF | O [auth a] P [auth a] Q [auth b] R [auth b] T [auth b] | DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE C37 H74 N O8 P SLKDGVPOSSLUAI-PGUFJCEWSA-N | |||
ZN Query on ZN | W [auth d] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CU Query on CU | L [auth a], S [auth b] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
CA Query on CA | J [auth a] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
MG Query on MG | K [auth a] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
Sao Paulo Research Foundation (FAPESP) | Brazil | 2013/07600-3 |