8DH6

Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth a]SCOP2B SuperfamilyCytochrome c oxidase subunit I-like8095115 3000653 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like8095567 3000671 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyCytochrome c oxidase subunit E8095803 3001402 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth a]PF00115e8dh6a1 A: alpha superhelicesX: Cytochrome c oxidase subunit I-likeH: Cytochrome c oxidase subunit I-like (From Topology)T: Cytochrome c oxidase subunit I-likeF: PF00115ECOD (1.6)
B [auth b]PF00116e8dh6b1 A: beta sandwichesX: Cupredoxin-likeH: Cupredoxin-related (From Topology)T: Cupredoxin-relatedF: PF00116ECOD (1.6)
B [auth b]PF02790e8dh6b2 A: extended segmentsX: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology)H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology)T: Cytochrome c oxidase subunit II-like, transmembrane regionF: PF02790ECOD (1.6)
C [auth c]PF00510e8dh6c1 A: alpha bundlesX: Cytochrome c oxidase subunit III-like (From Topology)H: Cytochrome c oxidase subunit III-like (From Topology)T: Cytochrome c oxidase subunit III-likeF: PF00510ECOD (1.6)
D [auth d]PF01215e8dh6d1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Cytochrome c oxidase Subunit FF: PF01215ECOD (1.6)
E [auth e]PF02936e8dh6e1 A: extended segmentsX: Mitochondrial cytochrome c oxidase subunit IV (From Topology)H: Mitochondrial cytochrome c oxidase subunit IV (From Topology)T: Mitochondrial cytochrome c oxidase subunit IVF: PF02936ECOD (1.6)
F [auth f]PF02284e8dh6f1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Cytochrome c oxidase subunit E (From Topology)T: Cytochrome c oxidase subunit EF: PF02284ECOD (1.6)
G [auth g]PF02238e8dh6g1 A: extended segmentsX: Mitochondrial cytochrome c oxidase subunit VIIa (From Topology)H: Mitochondrial cytochrome c oxidase subunit VIIa (From Topology)T: Mitochondrial cytochrome c oxidase subunit VIIaF: PF02238ECOD (1.6)
H [auth h]PF02935e8dh6h1 A: extended segmentsX: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) (From Topology)H: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) (From Topology)T: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)F: PF02935ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth i]Cytochrome c oxidase subunit 9, mitochondrial
A [auth a]Cytochrome c oxidase subunit 1
B [auth b]Cytochrome c oxidase subunit 2
C [auth c]Cytochrome c oxidase subunit 3
D [auth d]Cytochrome c oxidase subunit 4, mitochondrial
E [auth e]Cytochrome c oxidase subunit 5A, mitochondrial
F [auth f]Cytochrome c oxidase subunit 6, mitochondrial
G [auth g]Cytochrome c oxidase subunit 7, mitochondrial
H [auth h]Cytochrome c oxidase subunit 8, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth i]IPR014368Cytochrome c oxidase, subunit VIIa, fungalFamily
A [auth a]IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
A [auth a]IPR000883Cytochrome c oxidase subunit IFamily
A [auth a]IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
A [auth a]IPR023616Cytochrome c oxidase-like, subunit I domainDomain
A [auth a]IPR033944Cytochrome c oxidase subunit I domainDomain
B [auth b]IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
B [auth b]IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
B [auth b]IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
B [auth b]IPR045187Cytochrome c/quinol oxidase subunit IIFamily
B [auth b]IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
B [auth b]IPR008972CupredoxinHomologous Superfamily
B [auth b]IPR001505Copper centre Cu(A)Binding Site
B [auth b]IPR014222Cytochrome c oxidase, subunit IIDomain
C [auth c]IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
C [auth c]IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
C [auth c]IPR000298Cytochrome c oxidase subunit III-likeDomain
C [auth c]IPR033945Cytochrome c oxidase subunit III domainDomain
C [auth c]IPR024791Cytochrome c oxidase subunit IIIFamily
D [auth d]IPR002124Cytochrome c oxidase, subunit VbFamily
D [auth d]IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
E [auth e]IPR004203Cytochrome c oxidase subunit IV familyFamily
E [auth e]IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
F [auth f]IPR003204Cytochrome c oxidase, subunit Va/VIFamily
F [auth f]IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
G [auth g]IPR014367Cytochrome c oxidase subunit VII, budding yeastFamily
G [auth g]IPR039297Cytochrome c oxidase subunit VIIFamily
H [auth h]IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
H [auth h]IPR004202Cytochrome c oxidase subunit VIIcFamily