8CYG

Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.98 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of anellovirus-like particles reveal a mechanism for immune evasion.

Liou, S.H.Boggavarapu, R.Cohen, N.R.Zhang, Y.Sharma, I.Zeheb, L.Mukund Acharekar, N.Rodgers, H.D.Islam, S.Pitts, J.Arze, C.Swaminathan, H.Yozwiak, N.Ong, T.Hajjar, R.J.Chang, Y.Swanson, K.A.Delagrave, S.

(2024) Nat Commun 15: 7219-7219

  • DOI: https://doi.org/10.1038/s41467-024-51064-8
  • Primary Citation of Related Structures:  
    8CYG, 8V7X

  • PubMed Abstract: 

    Anelloviruses are nonpathogenic viruses that comprise a major portion of the human virome. Despite being ubiquitous in the human population, anelloviruses (ANVs) remain poorly understood. Basic features of the virus, such as the identity of its capsid protein and the structure of the viral particle, have been unclear until now. Here, we use cryogenic electron microscopy to describe the first structure of an ANV-like particle. The particle, formed by 60 jelly roll domain-containing ANV capsid proteins, forms an icosahedral particle core from which spike domains extend to form a salient part of the particle surface. The spike domains come together around the 5-fold symmetry axis to form crown-like features. The base of the spike domain, the P1 subdomain, shares some sequence conservation between ANV strains while a hypervariable region, forming the P2 subdomain, is at the spike domain apex. We propose that this structure renders the particle less susceptible to antibody neutralization by hiding vulnerable conserved domains while exposing highly diverse epitopes as immunological decoys, thereby contributing to the immune evasion properties of anelloviruses. These results shed light on the structure of anelloviruses and provide a framework to understand their interactions with the immune system.


  • Organizational Affiliation

    Ring Therapeutics, 140 First Street Suite 300, Cambridge, MA, 02139, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein672AnelloviridaeMutation(s): 0 
UniProt
Find proteins for M4NKL5 (TTV-like mini virus)
Explore M4NKL5 
Go to UniProtKB:  M4NKL5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM4NKL5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.98 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-04
    Type: Initial release