8CT1

CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-adjacent state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural mechanism of mitochondrial membrane remodelling by human OPA1.

von der Malsburg, A.Sapp, G.M.Zuccaro, K.E.von Appen, A.Moss 3rd, F.R.Kalia, R.Bennett, J.A.Abriata, L.A.Dal Peraro, M.van der Laan, M.Frost, A.Aydin, H.

(2023) Nature 620: 1101-1108

  • DOI: https://doi.org/10.1038/s41586-023-06441-6
  • Primary Citation of Related Structures:  
    8CT1, 8CT9

  • PubMed Abstract: 

    Distinct morphologies of the mitochondrial network support divergent metabolic and regulatory processes that determine cell function and fate 1-3 . The mechanochemical GTPase optic atrophy 1 (OPA1) influences the architecture of cristae and catalyses the fusion of the mitochondrial inner membrane 4,5 . Despite its fundamental importance, the molecular mechanisms by which OPA1 modulates mitochondrial morphology are unclear. Here, using a combination of cellular and structural analyses, we illuminate the molecular mechanisms that are key to OPA1-dependent membrane remodelling and fusion. Human OPA1 embeds itself into cardiolipin-containing membranes through a lipid-binding paddle domain. A conserved loop within the paddle domain inserts deeply into the bilayer, further stabilizing the interactions with cardiolipin-enriched membranes. OPA1 dimerization through the paddle domain promotes the helical assembly of a flexible OPA1 lattice on the membrane, which drives mitochondrial fusion in cells. Moreover, the membrane-bending OPA1 oligomer undergoes conformational changes that pull the membrane-inserting loop out of the outer leaflet and contribute to the mechanics of membrane remodelling. Our findings provide a structural framework for understanding how human OPA1 shapes mitochondrial morphology and show us how human disease mutations compromise OPA1 functions.


  • Organizational Affiliation

    Medical Biochemistry & Molecular Biology, Center for Molecular Signaling, PZMS, Saarland University Medical School, Homburg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dynamin-like 120 kDa protein, mitochondrial960Homo sapiensMutation(s): 0 
Gene Names: OPA1KIAA0567
EC: 3.6.5.5
UniProt & NIH Common Fund Data Resources
Find proteins for O60313 (Homo sapiens)
Explore O60313 
Go to UniProtKB:  O60313
PHAROS:  O60313
GTEx:  ENSG00000198836 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60313
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-30
    Type: Initial release
  • Version 1.1: 2023-09-06
    Changes: Database references
  • Version 1.2: 2023-09-13
    Changes: Database references
  • Version 1.3: 2024-10-23
    Changes: Data collection, Structure summary