8CDP | pdb_00008cdp

Cryo-EM structure of the RESC1-RESC2 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Structural basis for guide RNA selection by the RESC1-RESC2 complex.

Dolce, L.G.Nesterenko, Y.Walther, L.Weis, F.Kowalinski, E.

(2023) Nucleic Acids Res 51: 4602-4612

  • DOI: https://doi.org/10.1093/nar/gkad217
  • Primary Citation Related Structures: 
    8CDP

  • PubMed Abstract: 

    Kinetoplastid parasites, such as trypanosomes or leishmania, rely on RNA-templated RNA editing to mature mitochondrial cryptic pre-mRNAs into functional protein-coding transcripts. Processive pan-editing of multiple editing blocks within a single transcript is dependent on the 20-subunit RNA editing substrate binding complex (RESC) that serves as a platform to orchestrate the interactions between pre-mRNA, guide RNAs (gRNAs), the catalytic RNA editing complex (RECC), and a set of RNA helicases. Due to the lack of molecular structures and biochemical studies with purified components, neither the spacio-temporal interplay of these factors nor the selection mechanism for the different RNA components is understood. Here we report the cryo-EM structure of Trypanosoma brucei RESC1-RESC2, a central hub module of the RESC complex. The structure reveals that RESC1 and RESC2 form an obligatory domain-swapped dimer. Although the tertiary structures of both subunits closely resemble each other, only RESC2 selectively binds 5'-triphosphate-nucleosides, a defining characteristic of gRNAs. We therefore propose RESC2 as the protective 5'-end binding site for gRNAs within the RESC complex. Overall, our structure provides a starting point for the study of the assembly and function of larger RNA-bound kinetoplast RNA editing modules and might aid in the design of anti-parasite drugs.


  • Organizational Affiliation
    • EMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.

Macromolecule Content 

  • Total Structure Weight: 104.93 kDa 
  • Atom Count: 5,200 
  • Modeled Residue Count: 654 
  • Deposited Residue Count: 936 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Guide_RNA_associated_protein_-_putative475Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb07.22O10.680Tb927.7.2570
UniProt
Find proteins for Q57XL7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q57XL7 
Go to UniProtKB:  Q57XL7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ57XL7
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial guide RNA binding complex subunit 2461Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: 28H13.250Tb927.2.3800
UniProt
Find proteins for Q586X1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q586X1 
Go to UniProtKB:  Q586X1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ586X1
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-20-CE11-0016

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-29
    Type: Initial release
  • Version 1.1: 2023-04-12
    Changes: Database references
  • Version 1.2: 2023-05-31
    Changes: Database references
  • Version 1.3: 2024-07-24
    Changes: Data collection
  • Version 1.4: 2025-07-09
    Changes: Data collection, Structure summary