8ZWO | pdb_00008zwo

Structure of CTF18-PCNA with ATP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.99 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8ZWO

This is version 1.2 of the entry. See complete history

Literature

Structure of the human CTF18-RFC clamp loader bound to PCNA.

Briola, G.R.Tehseen, M.Al-Amodi, A.Young, G.Danazumi, A.U.Nguyen, P.Q.Savva, C.G.Hedglin, M.Hamdan, S.M.De Biasio, A.

(2026) Elife 13

  • DOI: https://doi.org/10.7554/eLife.103493
  • Primary Citation Related Structures: 
    8ZWO, 9IIN

  • PubMed Abstract: 

    Sliding clamps like PCNA are crucial processivity factors for replicative polymerases, requiring specific clamp loaders for loading onto DNA. The human alternative clamp loader CTF18-RFC interacts with the leading strand polymerase Pol ε and loads PCNA onto primer/template DNA using its RFC pentameric module. Here, we provide a structural characterization of the human CTF18-RFC complex and its interaction with PCNA. Our cryo-EM data support that the Ctf8 and Dcc1 subunits of CTF18-RFC, which form the regulatory module interacting with Pol ε, are flexibly tethered to the RFC module. A 2.9 Å cryo-EM structure shows the RFC module bound to PCNA in an autoinhibited conformation similar to the canonical RFC loader, marking the initial step of the clamp-loading reaction. The unique RFC1 (Ctf18) large subunit of CTF18-RFC, which based on the cryo-EM map shows high relative flexibility, is anchored to PCNA through an atypical low-affinity PIP box in the AAA+ domain and engages the RFC5 subunit using a novel β-hairpin at the disordered N-terminus. We show that deletion of this β-hairpin impairs the CTF18-RFC-PCNA complex stability, slows down clamp loading, and decreases the rate of primer synthesis by Pol ε. Our research identifies distinctive structural characteristics of the human CTF18-RFC complex, providing insights into its role in PCNA loading and the stimulation of leading strand synthesis by Pol ε.


  • Organizational Affiliation
    • Bioscience Program, Division of Biomedical Sciences, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Macromolecule Content 

  • Total Structure Weight: 361.13 kDa 
  • Atom Count: 19,771 
  • Modeled Residue Count: 2,504 
  • Deposited Residue Count: 3,232 
  • Unique protein chains: 6

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chromosome transmission fidelity protein 18 homolog1,012Homo sapiensMutation(s): 0 
Gene Names: CHTF18C16orf41CTF18
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WVB6 (Homo sapiens)
Explore Q8WVB6 
Go to UniProtKB:  Q8WVB6
PHAROS:  Q8WVB6
GTEx:  ENSG00000127586 
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UniProt GroupQ8WVB6
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Replication factor C subunit 2354Homo sapiensMutation(s): 0 
Gene Names: RFC2
UniProt & NIH Common Fund Data Resources
Find proteins for P35250 (Homo sapiens)
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Go to UniProtKB:  P35250
PHAROS:  P35250
GTEx:  ENSG00000049541 
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UniProt GroupP35250
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Replication factor C subunit 5340Homo sapiensMutation(s): 0 
Gene Names: RFC5
UniProt & NIH Common Fund Data Resources
Find proteins for P40937 (Homo sapiens)
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PHAROS:  P40937
GTEx:  ENSG00000111445 
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UniProt GroupP40937
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Replication factor C subunit 4363Homo sapiensMutation(s): 0 
Gene Names: RFC4
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Find proteins for P35249 (Homo sapiens)
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PHAROS:  P35249
GTEx:  ENSG00000163918 
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UniProt GroupP35249
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Replication factor C subunit 3362Homo sapiensMutation(s): 0 
Gene Names: RFC3
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Find proteins for P40938 (Homo sapiens)
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PHAROS:  P40938
GTEx:  ENSG00000133119 
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UniProt GroupP40938
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Proliferating cell nuclear antigen
F, G, H
267Homo sapiensMutation(s): 0 
Gene Names: PCNA
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Find proteins for P12004 (Homo sapiens)
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PHAROS:  P12004
GTEx:  ENSG00000132646 
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UniProt GroupP12004
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.99 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentSaudi Arabia--

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-18
    Type: Initial release
  • Version 1.1: 2025-08-27
    Changes: Data collection, Database references
  • Version 1.2: 2026-03-11
    Changes: Data collection, Database references