8ZSZ

Cryo-EM structure of human ZnT1, in the presence of zinc, determined in outward-facing conformation


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.59 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Zinc transporter 1 functions in copper uptake and cuproptosis.

Li, Y.Ma, J.Wang, R.Luo, Y.Zheng, S.Wang, X.

(2024) Cell Metab 

  • DOI: https://doi.org/10.1016/j.cmet.2024.07.009
  • Primary Citation of Related Structures:  
    8ZSB, 8ZSZ

  • PubMed Abstract: 

    Copper (Cu) is a co-factor for several essential metabolic enzymes. Disruption of Cu homeostasis results in genetic diseases such as Wilson's disease. Here, we show that the zinc transporter 1 (ZnT1), known to export zinc (Zn) out of the cell, also mediates Cu 2+ entry into cells and is required for Cu 2+ -induced cell death, cuproptosis. Structural analysis and functional characterization indicate that Cu 2+ and Zn 2+ share the same primary binding site, allowing Zn 2+ to compete for Cu 2+ uptake. Among ZnT members, ZnT1 harbors a unique inter-subunit disulfide bond that stabilizes the outward-open conformations of both protomers to facilitate efficient Cu 2+ transport. Specific knockout of the ZnT1 gene in the intestinal epithelium caused the loss of Lgr5+ stem cells due to Cu deficiency. ZnT1, therefore, functions as a dual Zn 2+ and Cu 2+ transporter and potentially serves as a target for using Zn 2+ in the treatment of Wilson's disease caused by Cu overload.


  • Organizational Affiliation

    National Institute of Biological Sciences, Beijing 102206, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proton-coupled zinc antiporter SLC30A1
A, B
507Homo sapiensMutation(s): 0 
Gene Names: SLC30A1ZNT1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6M5 (Homo sapiens)
Explore Q9Y6M5 
Go to UniProtKB:  Q9Y6M5
PHAROS:  Q9Y6M5
GTEx:  ENSG00000170385 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y6M5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.59 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Data collection, Database references