8ZIX | pdb_00008zix

RAT skeletal muscle F-actin

PDB DOI: https://doi.org/10.2210/pdb8ZIX/pdb
EM Map EMD-60132: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Rattus norvegicus
Mutation(s): No

Deposited: 2024-05-14 Released: 2025-01-29
Deposition Author(s): Li, D.N., Zhao, Q.Y., Liu, C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 8ZIX

This is version 1.0 of the entry. See complete history.

Literature

RAT skeletal muscle F-actin

Li, D.N., Zhao, Q.Y.

To be published.

Macromolecule Content

Total Structure Weight: 250.81 kDa
Atom Count: 17,556
Modeled Residue Count: 2,226
Deposited Residue Count: 2,226
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Actin, alpha skeletal muscle	A [auth P] B [auth R] C [auth A] D [auth E] E [auth B] A [auth P], B [auth R], C [auth A], D [auth E], E [auth B], F	371	Rattus norvegicus	Mutation(s): 0 EC: 3.6.4
UniProt
Find proteins for P68136 (Rattus norvegicus) Explore P68136 Go to UniProtKB: P68136
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P68136
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download:Ideal Coordinates CCD File SDF format, chain G [auth P] SDF format, chain H [auth R] SDF format, chain I [auth A] SDF format, chain J [auth E] SDF format, chain K [auth B] SDF format, chain L [auth F] MOL2 format, chain G [auth P] MOL2 format, chain H [auth R] MOL2 format, chain I [auth A] MOL2 format, chain J [auth E] MOL2 format, chain K [auth B] MOL2 format, chain L [auth F] mmCIF format, chain G [auth P] mmCIF format, chain H [auth R] mmCIF format, chain I [auth A] mmCIF format, chain J [auth E] mmCIF format, chain K [auth B] mmCIF format, chain L [auth F]	G [auth P] H [auth R] I [auth A] J [auth E] K [auth B] G [auth P], H [auth R], I [auth A], J [auth E], K [auth B], L [auth F]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain G [auth P] Focus chain H [auth R] Focus chain I [auth A] Focus chain J [auth E] Focus chain K [auth B] Focus chain L [auth F] Interactions & Density Focus chain G [auth P] Focus chain H [auth R] Focus chain I [auth A] Focus chain J [auth E] Focus chain K [auth B] Focus chain L [auth F]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.54 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.15.2_3472:

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-01-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-01-29
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.