8ZCX | pdb_00008zcx

Crystal Structure of a novel Aldehyde Dehydrogenase from Klebsiella pneumoniae

PDB DOI: https://doi.org/10.2210/pdb8ZCX/pdb

Classification: OXIDOREDUCTASE
Organism(s): Klebsiella pneumoniae
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2024-04-30 Released: 2025-05-07
Deposition Author(s): Zhang, J., Han, Y., Liu, W., Zhang, W.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.44 Å
R-Value Free:
0.252 (Depositor), 0.266 (DCC)
R-Value Work:
0.222 (Depositor), 0.234 (DCC)
R-Value Observed:
0.224 (Depositor)

Starting Model: in silico
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Literature

Crystal Structure of a novel Aldehyde Dehydrogenase from Klebsiella pneumoniae

Zhang, J., Han, Y., Liu, W., Zhang, W.

To be published.

Macromolecule Content

Total Structure Weight: 210.93 kDa
Atom Count: 14,061
Modeled Residue Count: 1,841
Deposited Residue Count: 1,956
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aldehyde dehydrogenase	A, B, C, D	489	Klebsiella pneumoniae	Mutation(s): 0 Gene Names: yfmT, xylC_1, CAZ10_02010, DT376_04100, IPC1295_07430, NCTC13621_03651, PAERUG_P19_London_7_VIM_2_05_10_05035 EC: 1.2.1.3 (PDB Primary Data), 1.2.1.28 (PDB Primary Data)
UniProt
Find proteins for A0A069Q1D5 (Pseudomonas aeruginosa) Explore A0A069Q1D5 Go to UniProtKB: A0A069Q1D5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A069Q1D5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.44 Å
R-Value Free: 0.252 (Depositor), 0.266 (DCC)
R-Value Work: 0.222 (Depositor), 0.234 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.669	α = 90
b = 146.744	β = 90
c = 149.528	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
HKL-2000	data reduction
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-05-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-05-07
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.