8Z9M

Cryo-EM structure of dimeric WDR11-FAM91A1 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The WDR11 complex is a receptor for acidic-cluster-containing cargo proteins.

Deng, H.Jia, G.Li, P.Tang, Y.Zhao, L.Yang, Q.Zhao, J.Wang, J.Tu, Y.Yong, X.Zhang, S.Mo, X.Billadeau, D.D.Su, Z.Jia, D.

(2024) Cell 187: 4272

  • DOI: https://doi.org/10.1016/j.cell.2024.06.024
  • Primary Citation of Related Structures:  
    8XFB, 8Z9M

  • PubMed Abstract: 

    Vesicle trafficking is a fundamental process that allows for the sorting and transport of specific proteins (i.e., "cargoes") to different compartments of eukaryotic cells. Cargo recognition primarily occurs through coats and the associated proteins at the donor membrane. However, it remains unclear whether cargoes can also be selected at other stages of vesicle trafficking to further enhance the fidelity of the process. The WDR11-FAM91A1 complex functions downstream of the clathrin-associated AP-1 complex to facilitate protein transport from endosomes to the TGN. Here, we report the cryo-EM structure of human WDR11-FAM91A1 complex. WDR11 directly and specifically recognizes a subset of acidic clusters, which we term super acidic clusters (SACs). WDR11 complex assembly and its binding to SAC-containing proteins are indispensable for the trafficking of SAC-containing proteins and proper neuronal development in zebrafish. Our studies thus uncover that cargo proteins could be recognized in a sequence-specific manner downstream of a protein coat.


  • Organizational Affiliation

    Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, West China Second University Hospital, State Key Laboratory of Biotherapy, Sichuan University, Chengdu 610041, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FAM91A1A [auth C],
C [auth A]
847Homo sapiensMutation(s): 0 
Gene Names: FAM91A1
UniProt & NIH Common Fund Data Resources
Find proteins for Q658Y4 (Homo sapiens)
Explore Q658Y4 
Go to UniProtKB:  Q658Y4
PHAROS:  Q658Y4
GTEx:  ENSG00000176853 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ658Y4
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
WD repeat-containing protein 11B [auth D],
D [auth B]
1,224Homo sapiensMutation(s): 0 
Gene Names: WDR11
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BZH6 (Homo sapiens)
Explore Q9BZH6 
Go to UniProtKB:  Q9BZH6
PHAROS:  Q9BZH6
GTEx:  ENSG00000120008 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BZH6
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2022YFC2303700
Ministry of Science and Technology (MoST, China)China2022YFA1105200
National Natural Science Foundation of China (NSFC)China92254302
National Natural Science Foundation of China (NSFC)China32222040
National Natural Science Foundation of China (NSFC)China32070049
National Natural Science Foundation of China (NSFC)China32300578

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-14
    Type: Initial release
  • Version 1.1: 2024-08-28
    Changes: Data collection, Database references