8YWO

Crystal structure of L-azetidine-2-carboxylate hydrolase soaked in (S)-azetidine-2-carboxylic acid

• PDB DOI: https://doi.org/10.2210/pdb8YWO/pdb

• Classification: HYDROLASE
• Organism(s): Pseudomonas sp. A2C
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-03-31 Released: 2024-05-08 
• Deposition Author(s): Toyoda, M., Mizutani, K., Mikami, B., Wackett, L.P., Esaki, N., Kurihara, T.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.58 Å
• R-Value Free: 0.183 
• R-Value Work: 0.132 
• R-Value Observed: 0.134 

Starting Model: experimental

Literature

Research for the crystal structure of L-azetidine-2-carboxylate hydrolase

Toyoda, M., Jitsumori, K., Mikami, B., Mizutani, K., Esaki, N., Wackett, L.P., Kurihara, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 27.25 kDa 
• Atom Count: 2,374 
• Modelled Residue Count: 240 
• Deposited Residue Count: 240 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
(S)-2-haloacid dehalogenase	A	240	Pseudomonas sp. A2C	Mutation(s): 0  EC: 3.8.1.2
UniProt
Find proteins for B2Z3V8 (Pseudomonas sp. AC2) Explore B2Z3V8  Go to UniProtKB:  B2Z3V8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
02A (Subject of Investigation/LOI)	B [auth A]	(2S)-azetidine-2-carboxylic acid C4 H7 N O2 IADUEWIQBXOCDZ-VKHMYHEASA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.58 Å
• R-Value Free: 0.183 
• R-Value Work: 0.132 
• R-Value Observed: 0.134 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.105	α = 90
b = 64.419	β = 106.99
c = 54.307	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-08 
Deposition Author(s): Toyoda, M., Mizutani, K., Mikami, B., Wackett, L.P., Esaki, N., Kurihara, T.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-05-08
  Type: Initial release