8Y3P

ASFV p72 in complex with Fab C9

• PDB DOI: https://doi.org/10.2210/pdb8Y3P/pdb
• EM Map EMD-38894: EMDB EMDataResource

• Classification: VIRAL PROTEIN/IMMUNE SYSTEM
• Organism(s): African swine fever virus, Sus scrofa
• Expression System: Homo sapiens, Sus scrofa
• Mutation(s): No 


• Deposited: 2024-01-29 Released: 2024-09-04 
• Deposition Author(s): Wang, X., Fu, W., Yu, Q.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.48 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

p72 antigenic mapping reveals a potential supersite of vulnerability for African swine fever virus.

Yu, Q., Liang, D., Fu, W., Zhang, L., Wang, J., Zhang, Z., Sun, Y., Zhu, D., Zheng, B., Zhu, L., Xiang, Y., Zhao, D., Wang, X.

(2024) Cell Discov 10: 80-80

• PubMed: 39080252 
• DOI: https://doi.org/10.1038/s41421-024-00692-x
• Primary Citation of Related Structures:  
  8Y3O, 8Y3P, 8Y3Q, 8Y3R, 8ZL9

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Organizational Affiliation: 

CAS Key Laboratory of Infection and Immunity, National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 9-mer - A3B3C3 Pseudo Symmetry: Cyclic - C3  (Explore in 3D)
Pseudo Stoichiometry: Hetero 9-mer - A6B3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 312.42 kDa 
• Atom Count: 17,028 
• Modelled Residue Count: 2,163 
• Deposited Residue Count: 2,781 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
B646L	A [auth B], D [auth A], G [auth C]	693	African swine fever virus	Mutation(s): 0  Gene Names: p72, B646L, B646L CDS, ASFV-Georgia_4-106
UniProt
Find proteins for Q5IZK2 (African swine fever virus) Explore Q5IZK2  Go to UniProtKB:  Q5IZK2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy chain of C9	B [auth G], E [auth D], H [auth E]	125	Sus scrofa	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Light chain of C9	C [auth L], F, I [auth H]	109	Sus scrofa	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.48 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Wang, X., Fu, W., Yu, Q.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Data collection, Structure summary