8XV5

Pyridoxamine-bound human SLC19A3

PDB DOI: https://doi.org/10.2210/pdb8XV5/pdb
EM Map EMD-38692: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Escherichia coli, Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMD

Deposited: 2024-01-14 Released: 2024-03-27
Deposition Author(s): Dang, Y., Wang, G.P., Zhang, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC), Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Substrate and drug recognition mechanisms of SLC19A3.

Dang, Y., Zhang, T., Pidathala, S., Wang, G., Wang, Y., Chen, N., Song, C., Lee, C.H., Zhang, Z.

(2024) Cell Res 34: 458-461

PubMed: 38503960 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41422-024-00951-2
Primary Citation of Related Structures:
8XV2, 8XV5, 8XV9

Organizational Affiliation

State Key Laboratory of Membrane Biology, Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.

Macromolecule Content

Total Structure Weight: 68.08 kDa
Atom Count: 3,122
Modelled Residue Count: 388
Deposited Residue Count: 607
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Soluble cytochrome b562,Thiamine transporter 2	A	607	Escherichia coli, Homo sapiens This entity is chimeric	Mutation(s): 0 Gene Names: cybC, SLC19A3 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7 Go to UniProtKB: P0ABE7
Find proteins for Q9BZV2 (Homo sapiens) Explore Q9BZV2 Go to UniProtKB: Q9BZV2
PHAROS: Q9BZV2 GTEx: ENSG00000135917
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P0ABE7Q9BZV2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PXM (Subject of Investigation/LOI) Query on PXM Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL C₈ H₁₂ N₂ O₂ NHZMQXZHNVQTQA-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]