8XIF

The crystal structure of the AEP domain of VACV D5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 

Starting Model: in silico
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This is version 1.2 of the entry. See complete history


Literature

Structural and functional insights into the helicase protein E5 of Mpox virus.

Zhang, W.Liu, Y.Yang, M.Yang, J.Shao, Z.Gao, Y.Jiang, X.Cui, R.Zhang, Y.Zhao, X.Shao, Q.Cao, C.Li, H.Li, L.Liu, H.Gao, H.Gan, J.

(2024) Cell Discov 10: 67-67

  • DOI: https://doi.org/10.1038/s41421-024-00680-1
  • Primary Citation of Related Structures:  
    8XIF, 8XIG, 8XJ6, 8XJ7, 8XJ8

  • PubMed Abstract: 

    Mpox virus (MPXV) can cause mpox in humans. Due to its quick and wide spread in the past two years, mpox has turned into a significant public health concern. Helicase E5 is a multi-domain protein; its primer synthesis and DNA unwinding activity are required for genome uncoating and DNA replication of MPXV. However, the in vitro DNA unwinding activity has never been demonstrated. Here, we report the structural and biochemical studies of MPXV E5, showing that the full-length protein adopts an auto-inhibited conformation. Truncation of the N-terminus can recover the in vitro unwinding activity of E5 towards the forked DNA. Further structural analysis reveals that MPXV E5 shares a conserved mechanism in DNA unwinding and primer synthesis with the homologous proteins. These findings not only advance our understanding on the function of MPXV E5, but also provide a solid basis for the development of anti-poxvirus drugs.


  • Organizational Affiliation

    Shanghai Sci-Tech Inno Center for Infection & Immunity, State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncoating factor OPG117224Vaccinia virusMutation(s): 0 
Gene Names: OPG117VACWR110D5R
EC: 3.6.4
UniProt
Find proteins for P04305 (Vaccinia virus (strain Western Reserve))
Explore P04305 
Go to UniProtKB:  P04305
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04305
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.47α = 90
b = 56.62β = 90
c = 74.16γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Database references
  • Version 1.2: 2024-07-10
    Changes: Database references