8WW8 | pdb_00008ww8

Structure of Apo-Form AsfvPrimPol Hexamer

PDB DOI: https://doi.org/10.2210/pdb8WW8/pdb
EM Map EMD-37884: EMDB EMDataResource

Classification: DNA BINDING PROTEIN
Organism(s): African swine fever virus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-10-25 Released: 2025-04-30
Deposition Author(s): Shi, T.H., Guo, Y.Y., Yan, R.H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8WW8

This is version 1.0 of the entry. See complete history.

Literature

Structure of ADP-Form AsfvPrimPol Hexamer

Shi, T.H., Guo, Y.Y., Yan, R.H.

To be published.

Macromolecule Content

Total Structure Weight: 676.33 kDa
Atom Count: 40,886
Modeled Residue Count: 5,129
Deposited Residue Count: 5,832
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative primase C962R	A, B, C, D, E A, B, C, D, E, F	972	African swine fever virus	Mutation(s): 0 Gene Names: C962R CDS
UniProt
Find proteins for A0A2X0TKI6 (African swine fever virus) Explore A0A2X0TKI6 Go to UniProtKB: A0A2X0TKI6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2X0TKI6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.99 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-30

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-04-30
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.