8WVG

Transporter bound with inhibitor

• PDB DOI: https://doi.org/10.2210/pdb8WVG/pdb
• EM Map EMD-37867: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Mus musculus, Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2023-10-23 Released: 2024-09-25 
• Deposition Author(s): Im, D., Iwata, S.
• Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.18 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Neurotransmitter recognition by human vesicular monoamine transporter 2.

Im, D., Jormakka, M., Juge, N., Kishikawa, J., Kato, T., Sugita, Y., Noda, T., Uemura, T., Shiimura, Y., Miyaji, T., Asada, H., Iwata, S.

(2024) Nat Commun 15

• DOI: https://doi.org/10.1038/s41467-024-51960-z

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A2B1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 116.91 kDa 
• Atom Count: 6,361 
• Modelled Residue Count: 831 
• Deposited Residue Count: 1,070 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FabH	A [auth H]	336	Mus musculus	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
FabL	B [auth L]	220	Mus musculus	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Synaptic vesicular amine transporter	C [auth A]	514	Homo sapiens	Mutation(s): 0  Gene Names: SLC18A2
UniProt & NIH Common Fund Data Resources
Find proteins for Q05940 (Homo sapiens) Explore Q05940  Go to UniProtKB:  Q05940
PHAROS:  Q05940 GTEx:  ENSG00000165646

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
XEQ (Subject of Investigation/LOI)	D [auth A]	(3~{S},11~{b}~{R})-9,10-dimethoxy-3-(2-methylpropyl)-1,3,4,6,7,11~{b}-hexahydrobenzo[a]quinolizin-2-one C19 H27 N O3 MKJIEFSOBYUXJB-GOEBONIOSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.18 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5109:

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-25 
Deposition Author(s): Im, D., Iwata, S.

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Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	--

Revision History  

• Version 1.0: 2024-09-25
  Type: Initial release