8WTU

Cryo-EM structure of noradrenaline transporter in apo state

PDB DOI: https://doi.org/10.2210/pdb8WTU/pdb
EM Map EMD-37842: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-10-19 Released: 2024-08-07
Deposition Author(s): Zhao, Y., Hu, T., Yu, Z.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Transport and inhibition mechanisms of the human noradrenaline transporter.

Hu, T., Yu, Z., Zhao, J., Meng, Y., Salomon, K., Bai, Q., Wei, Y., Zhang, J., Xu, S., Dai, Q., Yu, R., Yang, B., Loland, C.J., Zhao, Y.

(2024) Nature

DOI: https://doi.org/10.1038/s41586-024-07638-z

Macromolecule Content

Total Structure Weight: 64.02 kDa
Atom Count: 4,348
Modelled Residue Count: 542
Deposited Residue Count: 566
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium-dependent noradrenaline transporter	A	566	Homo sapiens	Mutation(s): 0 Gene Names: SLC6A2
UniProt & NIH Common Fund Data Resources
Find proteins for P23975 (Homo sapiens) Explore P23975 Go to UniProtKB: P23975
PHAROS: P23975 GTEx: ENSG00000103546
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P23975
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain A	Go to GlyGen: P23975-1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-08-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	XDB37030304

Revision History (Full details and data files)

Version 1.0: 2024-08-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.