8WQZ

X-ray Crystal Structure of Pseudoazurin Met16Gly variant

• PDB DOI: https://doi.org/10.2210/pdb8WQZ/pdb
• Entry: 8WQZ supersedes: 5WV4

• Classification: ELECTRON TRANSPORT
• Organism(s): Achromobacter cycloclastes
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2023-10-12 Released: 2024-10-16 
• Deposition Author(s): Sugai, A., Yamaguchi, T., Kohzuma, T.
• Funding Organization(s): Ministry of Education, Culture, Sports, Science and Technology (Japan)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.20 Å
• R-Value Free: 0.153 
• R-Value Work: 0.131 

Starting Model: experimental

Literature

X-ray Crystal Structure of Pseudoazurin Met16Gly variant

Sugai, A., Yamaguchi, T., Kohzuma, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: mass spectrometry

Macromolecule Content

• Total Structure Weight: 13.23 kDa 
• Atom Count: 1,159 
• Modelled Residue Count: 124 
• Deposited Residue Count: 124 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pseudoazurin	A	124	Achromobacter cycloclastes	Mutation(s): 1  Gene Names: bcp
UniProt
Find proteins for P19567 (Achromobacter cycloclastes) Explore P19567  Go to UniProtKB:  P19567

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PEG	C [auth A], D [auth A]	DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N
CU (Subject of Investigation/LOI)	B [auth A]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.20 Å
• R-Value Free: 0.153 
• R-Value Work: 0.131 
• Space Group: P 2₁ 2₁ 2₁
• Diffraction Data: https://doi.org/10.18430/M38WQZ

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.181	α = 90
b = 53.014	β = 90
c = 59.114	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data scaling
XDS	data reduction
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-10-16 
Deposition Author(s): Sugai, A., Yamaguchi, T., Kohzuma, T.
• This entry supersedes: 5WV4

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Funding Organization	Location	Grant Number
Ministry of Education, Culture, Sports, Science and Technology (Japan)	Japan	--

Revision History  

• Version 1.0: 2024-10-16
  Type: Initial release