8WJE

Structure of apo-SPO1 Tad2

PDB DOI: https://doi.org/10.2210/pdb8WJE/pdb

Classification: VIRAL PROTEIN
Organism(s): Bacillus phage SPO1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-09-25 Released: 2024-09-25
Deposition Author(s): Xiao, Y., Feng, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free: 0.269
R-Value Work: 0.227
R-Value Observed: 0.229

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of apo-SPO1 Tad2

Xiao, Y., Feng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 64.72 kDa
Atom Count: 4,260
Modelled Residue Count: 528
Deposited Residue Count: 576
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp34.65	A [auth B] B [auth C] C [auth D] D [auth E] E [auth F] A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	96	Bacillus phage SPO1	Mutation(s): 0 Gene Names: 34.65
UniProt
Find proteins for B6V311 (Bacillus phage SP01) Explore B6V311 Go to UniProtKB: B6V311
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B6V311
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.27 Å
R-Value Free: 0.269
R-Value Work: 0.227
R-Value Observed: 0.229
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.094	α = 90
b = 69.108	β = 95.86
c = 92.154	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-09-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-09-25
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.