8WEX

Crystal structure of N-acetyl sugar amidotransferase from Legionella pneumophila


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 

Starting Model: in silico
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Literature

Structural Characterization of an N-Acetyl Sugar Amidotransferase Involved in the Lipopolysaccharide Biosynthesis in Bacteria.

Gao, J.Xu, W.Liu, T.Sun, W.Wang, N.Ma, J.Ge, H.

(2023) Int J Mol Sci 24

  • DOI: https://doi.org/10.3390/ijms242015491
  • Primary Citation of Related Structures:  
    8WEX

  • PubMed Abstract: 

    N-acetyl sugar amidotransferase (NASAT) is involved in the lipopolysaccharide (LPS) biosynthesis pathway that catalyzes the formation of the acetamido moiety (sugar-NC(=NH)CH3) on the O-chain. So far, little is known about its structural and functional properties. Here, we report the crystal structure of an N-acetyl sugar amidotransferase from Legionella pneumophila (LpNASAT) at 2.33 Å resolution. LpNASAT folds into a compact basin-shaped architecture with an unusually wide and open putative substrate-binding pocket and a conserved zinc ion-binding tetracysteine motif. The pocket contains a Rossmann-like fold with a PP-loop, suggesting that the NASAT-catalyzed amidotransfer reaction probably requires the conversion of ATP to AMP and PPi. Our data provide structural insights into the NASAT family of proteins, and allow us to possibly identify its functionally important regions.


  • Organizational Affiliation

    Information Materials and Intelligent Sensing Laboratory of Anhui Province, Institutes of Material Science and Information Technology, Anhui University, Hefei 230601, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
N-acetyl sugar amidotransferase
A, B
468Legionella pneumophilaMutation(s): 0 
Gene Names: D1H98_00335
UniProt
Find proteins for A0A3A6V1D8 (Legionella pneumophila subsp. pneumophila)
Explore A0A3A6V1D8 
Go to UniProtKB:  A0A3A6V1D8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A3A6V1D8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 
  • Space Group: P 32 1 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.722α = 90
b = 74.722β = 90
c = 319.678γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
autoPXdata reduction
pointlessdata scaling
MR-Rosettaphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32370196
National Natural Science Foundation of China (NSFC)China31970103

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-22
    Type: Initial release