8WDB

Deposited: 2023-09-14 Released: 2024-09-18
Deposition Author(s): Hu, T., Zhang, B., Rao, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Hu, T., Zhang, B., Rao, Z.

To be published.

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable dipeptide-transport ATP-binding protein ABC transporter DppD	A [auth D]	548	Mycobacterium tuberculosis H37Rv	Mutation(s): 2 Gene Names: dppD, Rv3663c
UniProt
Find proteins for I6Y482 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore I6Y482 Go to UniProtKB: I6Y482
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	I6Y482
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable dipeptide-transport integral membrane protein ABC transporter DppB	B	308	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: dppB, Rv3665c Membrane Entity: Yes
UniProt
Find proteins for I6YGV9 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore I6YGV9 Go to UniProtKB: I6YGV9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	I6YGV9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable dipeptide-transport integral membrane protein ABC transporter DppC	C	287	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: dppC, Rv3664c Membrane Entity: Yes
UniProt
Find proteins for L0TEV4 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore L0TEV4 Go to UniProtKB: L0TEV4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	L0TEV4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable periplasmic dipeptide-binding lipoprotein DppA	D [auth A]	517	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: dppA, Rv3666c
UniProt
Find proteins for I6X811 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore I6X811 Go to UniProtKB: I6X811
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	I6X811
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain E [auth D] SDF format, chain F [auth D] MOL2 format, chain E [auth D] MOL2 format, chain F [auth D]	E [auth D], F [auth D]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain E [auth D] Focus chain F [auth D] Interactions & Density Focus chain E [auth D] Focus chain F [auth D]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain G [auth D] SDF format, chain H [auth D] MOL2 format, chain G [auth D] MOL2 format, chain H [auth D]	G [auth D], H [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain G [auth D] Focus chain H [auth D] Interactions & Density Focus chain G [auth D] Focus chain H [auth D]