8W36 | pdb_00008w36

rabbit actin in the absence of potassium

PDB DOI: https://doi.org/10.2210/pdb8W36/pdb
EM Map EMD-43763: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Oryctolagus cuniculus
Expression System: Oryctolagus cuniculus
Mutation(s): No

Deposited: 2024-02-21 Released: 2025-02-26
Deposition Author(s): Volkmann, N.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 8W36

This is version 1.0 of the entry. See complete history.

Literature

rabbit actin in the absence of potassium

Volkmann, N.

To be published.

Macromolecule Content

Total Structure Weight: 209.19 kDa
Atom Count: 14,640
Modeled Residue Count: 1,855
Deposited Residue Count: 1,855
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Actin, alpha skeletal muscle	A [auth D], B [auth C], C [auth A], D [auth B], E	371	Oryctolagus cuniculus	Mutation(s): 0 Gene Names: ACTA1, ACTA EC: 3.6.4
UniProt
Find proteins for P68135 (Oryctolagus cuniculus) Explore P68135 Go to UniProtKB: P68135
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P68135
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download:Ideal Coordinates CCD File SDF format, chain F [auth D] SDF format, chain H [auth C] SDF format, chain J [auth A] SDF format, chain L [auth B] SDF format, chain N [auth E] MOL2 format, chain F [auth D] MOL2 format, chain H [auth C] MOL2 format, chain J [auth A] MOL2 format, chain L [auth B] MOL2 format, chain N [auth E] mmCIF format, chain F [auth D] mmCIF format, chain H [auth C] mmCIF format, chain J [auth A] mmCIF format, chain L [auth B] mmCIF format, chain N [auth E]	F [auth D], H [auth C], J [auth A], L [auth B], N [auth E]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain F [auth D] Focus chain H [auth C] Focus chain J [auth A] Focus chain L [auth B] Focus chain N [auth E] Interactions & Density Focus chain F [auth D] Focus chain H [auth C] Focus chain J [auth A] Focus chain L [auth B] Focus chain N [auth E]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain G [auth D] SDF format, chain I [auth C] SDF format, chain K [auth A] SDF format, chain M [auth B] SDF format, chain O [auth E] MOL2 format, chain G [auth D] MOL2 format, chain I [auth C] MOL2 format, chain K [auth A] MOL2 format, chain M [auth B] MOL2 format, chain O [auth E] mmCIF format, chain G [auth D] mmCIF format, chain I [auth C] mmCIF format, chain K [auth A] mmCIF format, chain M [auth B] mmCIF format, chain O [auth E]	G [auth D], I [auth C], K [auth A], M [auth B], O [auth E]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain G [auth D] Focus chain I [auth C] Focus chain K [auth A] Focus chain M [auth B] Focus chain O [auth E] Interactions & Density Focus chain G [auth D] Focus chain I [auth C] Focus chain K [auth A] Focus chain M [auth B] Focus chain O [auth E]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
HIC Query on HIC	A [auth D], B [auth C], C [auth A], D [auth B], E	L-PEPTIDE LINKING	C₇ H₁₁ N₃ O₂		HIS

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.27 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21_5207:

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-02-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2025-02-26
Type: Initial release

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