8VPN

Phosphorylated human NCC in complex with indapamide


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural bases for Na + -Cl - cotransporter inhibition by thiazide diuretic drugs and activation by kinases.

Zhao, Y.Schubert, H.Blakely, A.Forbush, B.Smith, M.D.Rinehart, J.Cao, E.

(2024) Nat Commun 15: 7006-7006

  • DOI: https://doi.org/10.1038/s41467-024-51381-y
  • Primary Citation of Related Structures:  
    8VPN, 8VPP, 9BWT

  • PubMed Abstract: 

    The Na + -Cl - cotransporter (NCC) drives salt reabsorption in the kidney and plays a decisive role in balancing electrolytes and blood pressure. Thiazide and thiazide-like diuretics inhibit NCC-mediated renal salt retention and have been cornerstones for treating hypertension and edema since the 1950s. Here we determine NCC co-structures individually complexed with the thiazide drug hydrochlorothiazide, and two thiazide-like drugs chlorthalidone and indapamide, revealing that they fit into an orthosteric site and occlude the NCC ion translocation pathway. Aberrant NCC activation by the WNKs-SPAK kinase cascade underlies Familial Hyperkalemic Hypertension, but it remains unknown whether/how phosphorylation transforms the NCC structure to accelerate ion translocation. We show that an intracellular amino-terminal motif of NCC, once phosphorylated, associates with the carboxyl-terminal domain, and together, they interact with the transmembrane domain. These interactions suggest a phosphorylation-dependent allosteric network that directly influences NCC ion translocation.


  • Organizational Affiliation

    Department of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 12 member 31,020Homo sapiensMutation(s): 0 
Gene Names: SLC12A3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for J3QSS1 (Homo sapiens)
Explore J3QSS1 
Go to UniProtKB:  J3QSS1
GTEx:  ENSG00000070915 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupJ3QSS1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 12 member 31,020Homo sapiensMutation(s): 0 
Gene Names: SLC12A3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for J3QSS1 (Homo sapiens)
Explore J3QSS1 
Go to UniProtKB:  J3QSS1
GTEx:  ENSG00000070915 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupJ3QSS1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download Ideal Coordinates CCD File 
D [auth A],
E [auth B]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
BL1 (Subject of Investigation/LOI)
Query on BL1

Download Ideal Coordinates CCD File 
C [auth A]4-chloro-N-[(2S)-2-methyl-2,3-dihydro-1H-indol-1-yl]-3-sulfamoylbenzamide
C16 H16 Cl N3 O3 S
NDDAHWYSQHTHNT-JTQLQIEISA-N
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
A
L-PEPTIDE LINKINGC3 H8 N O6 PSER
TPO
Query on TPO
A
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesDK128592

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-04
    Type: Initial release