8VJH

Cryo-EM of tail-tip of bacteriophage Chi


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structure of flagellotropic bacteriophage Chi.

Sonani, R.R.Esteves, N.C.Scharf, B.E.Egelman, E.H.

(2024) Structure 32: 856-865.e3

  • DOI: https://doi.org/10.1016/j.str.2024.03.011
  • Primary Citation of Related Structures:  
    8VHX, 8VJA, 8VJH, 8VJI

  • PubMed Abstract: 

    The flagellotropic bacteriophage χ (Chi) infects bacteria via the flagellar filament. Despite years of study, its structural architecture remains partly characterized. Through cryo-EM, we unveil χ's nearly complete structure, encompassing capsid, neck, tail, and tail tip. While the capsid and tail resemble phage YSD1, the neck and tail tip reveal new proteins and their arrangement. The neck shows a unique conformation of the tail tube protein, forming a socket-like structure for attachment to the neck. The tail tip comprises four proteins, including distal tail protein (DTP), two baseplate hub proteins (BH1P and BH2P), and tail tip assembly protein (TAP) exhibiting minimal organization compared to other siphophages. Deviating from the consensus in other siphophages, DTP in χ forms a trimeric assembly, reducing tail symmetry from 6-fold to 3-fold at the tip. These findings illuminate the previously unexplored structural organization of χ's neck and tail tip.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA 22903, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Minor tail protein1,296Chivirus chiMutation(s): 0 
UniProt
Find proteins for M9NVD3 (Chivirus chi)
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Go to UniProtKB:  M9NVD3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM9NVD3
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Distal tail protein562Chivirus chiMutation(s): 0 
UniProt
Find proteins for M9NT03 (Chivirus chi)
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Go to UniProtKB:  M9NT03
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UniProt GroupM9NT03
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Baseplate hub 1 protein, gp27C [auth D]272Chivirus chiMutation(s): 0 
UniProt
Find proteins for M9NUT0 (Chivirus chi)
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Go to UniProtKB:  M9NUT0
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UniProt GroupM9NUT0
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Tail TubeD [auth J],
E [auth K]
381Chivirus chiMutation(s): 0 
UniProt
Find proteins for M9NUS9 (Chivirus chi)
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UniProt GroupM9NUS9
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tape measureF [auth Q]1,431Chivirus chiMutation(s): 0 
UniProt
Find proteins for M9NVD0 (Chivirus chi)
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UniProt GroupM9NVD0
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Tail assembly protein 1G [auth U]76Chivirus chiMutation(s): 0 
UniProt
Find proteins for M9NTL4 (Chivirus chi)
Explore M9NTL4 
Go to UniProtKB:  M9NTL4
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UniProt GroupM9NTL4
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM122510

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-02
    Type: Initial release