8VCZ

Crystal Structure of KAI2 from Oryza sativa

PDB DOI: https://doi.org/10.2210/pdb8VCZ/pdb

Classification: HYDROLASE
Organism(s): Oryza sativa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-12-14 Released: 2024-07-31
Deposition Author(s): Gilio, A.K., Shabek, N., Guercio, A.M., Pawlak, J.
Funding Organization(s): National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free: 0.198
R-Value Work: 0.168
R-Value Observed: 0.169

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural insights into rice KAI2 receptor provide functional implications for perception and signal transduction

Guercio, A.M., Gilio, A.K., Pawlak, J., Shabek, N.

(2024) J Biol Chem

DOI: https://doi.org/10.1016/j.jbc.2024.107593

Macromolecule Content

Total Structure Weight: 29.75 kDa
Atom Count: 2,170
Modelled Residue Count: 271
Deposited Residue Count: 272
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable esterase D14L	A	272	Oryza sativa	Mutation(s): 0 Gene Names: D14L, Os03g0437600, LOC_Os03g32270, Os11g0384789
UniProt
Find proteins for Q10J20 (Oryza sativa subsp. japonica) Explore Q10J20 Go to UniProtKB: Q10J20
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q10J20
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free: 0.198
R-Value Work: 0.168
R-Value Observed: 0.169
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.636	α = 90
b = 85.385	β = 114.91
c = 44.62	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-07-31

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	--

Revision History (Full details and data files)

Version 1.0: 2024-07-31
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.