8UYY

HBV Cp149 capsid protein (Preassembled capsid incubated with triton X-100)

• PDB DOI: https://doi.org/10.2210/pdb8UYY/pdb
• EM Map EMD-42827: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Hepatitis B virus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-11-14 Released: 2024-11-20 
• Deposition Author(s): Bianchini, E.N., Wang, J.C.Y., Hu, J.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Structural Insights into Capsid Conformation and Dynamics: Cryo-EM Structures of HBV Capsids from HEK-293T Cells

Bianchini, E.N., Liu, H., Cai, Y., Shanklin, J., Hu, J., Wang, J.C.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 240-mer - A240 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 84.33 kDa 
• Atom Count: 4,544 
• Modelled Residue Count: 570 
• Deposited Residue Count: 732 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A, B, C, D	183	Hepatitis B virus	Mutation(s): 0  Gene Names: pre-c/core, C, core, pre-C/C, PreC, preC/C, precore-core, HBVgp4
UniProt
Find proteins for Q89656 (Hepatitis B virus) Explore Q89656  Go to UniProtKB:  Q89656

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	ISOLDE
MODEL REFINEMENT	PHENIX
MODEL REFINEMENT	Coot
RECONSTRUCTION	RELION	3.1

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-20 
Deposition Author(s): Bianchini, E.N., Wang, J.C.Y., Hu, J.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI173104
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI043453

Revision History  

• Version 1.0: 2024-11-20
  Type: Initial release