8UYX | pdb_00008uyx

HBV Cp149 capsid protein (Wild-type control)

PDB DOI: https://doi.org/10.2210/pdb8UYX/pdb
EM Map EMD-42826: EMDB EMDataResource

Classification: VIRUS
Organism(s): Hepatitis B virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-11-14 Released: 2024-11-20
Deposition Author(s): Bianchini, E.N., Wang, J.C.Y., Hu, J.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8UYX

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM Structures of HBV Capsids from Human Cells at Near-Atomic Resolution

Bianchini, E.N., Perez-Segura, C., Liu, H., Luckenbaugh, L., Flanagan, J., Cai, Y., Shanklin, J., Zlotnick, A., Hadden-Perilla, J.A., Hu, J., Wang, J.C.Y.

(2025) Structure

Macromolecule Content

Total Structure Weight: 64.63 kDa
Atom Count: 4,544
Modeled Residue Count: 570
Deposited Residue Count: 572
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A, B, C, D	143	Hepatitis B virus	Mutation(s): 0 Gene Names: pre-c/core, C, core, pre-C/C, PreC, preC/C, precore-core, HBVgp4
UniProt
Find proteins for P03147 (Hepatitis B virus genotype D subtype adw (isolate United Kingdom/adyw/1979)) Explore P03147 Go to UniProtKB: P03147
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03147
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	ISOLDE
MODEL REFINEMENT	PHENIX
MODEL REFINEMENT	Coot
RECONSTRUCTION	RELION	3.1

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-11-20

Deposition Author(s):

Bianchini, E.N.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI173104
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI043453

Revision History (Full details and data files)

Version 1.0: 2024-11-20
Type: Initial release
Version 1.1: 2025-12-03
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.