8U39

Structure of Human Mitochondrial Chaperonin V72I mutant

  • Classification: CHAPERONE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2023-09-07 Released: 2024-08-14 
  • Deposition Author(s): Chen, L., Wang, J.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Cryo-EM structure and molecular dynamic simulations explain the enhanced stability and ATP activity of the pathological chaperonin mutant.

Syed, A.Zhai, J.Guo, B.Zhao, Y.Wang, J.C.Chen, L.

(2024) Structure 32: 575-584.e3

  • DOI: https://doi.org/10.1016/j.str.2024.02.001
  • Primary Citation of Related Structures:  
    8U39

  • PubMed Abstract: 

    Chaperonins Hsp60s are required for cellular vitality by assisting protein folding in an ATP-dependent mechanism. Although conserved, the human mitochondrial mHsp60 exhibits molecular characteristics distinct from the E. coli GroEL, with different conformational assembly and higher subunit association dynamics, suggesting a different mechanism. We previously found that the pathological mutant mHsp60 V72I exhibits enhanced subunit association stability and ATPase activity. To provide structural explanations for the V72I mutational effects, here we determined a cryo-EM structure of mHsp60 V72I . Our structural analysis combined with molecular dynamic simulations showed mHsp60 V72I with increased inter-subunit interface, binding free energy, and dissociation force, all contributing to its enhanced subunit association stability. The gate to the nucleotide-binding (NB) site in mHsp60 V72I mimicked the open conformation in the nucleotide-bound state with an additional open channel leading to the NB site, both promoting the mutant's ATPase activity. Our studies highlight the importance of mHsp60's characteristics in its biological function.


  • Organizational Affiliation

    Department of Molecular and Cellular Biochemistry, Indiana University Bloomington, 212 S. Hawthorne Dr., Bloomington, IN 47405, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
60 kDa heat shock protein, mitochondrial524Homo sapiensMutation(s): 1 
Gene Names: HSPD1
UniProt & NIH Common Fund Data Resources
Find proteins for P10809 (Homo sapiens)
Explore P10809 
Go to UniProtKB:  P10809
PHAROS:  P10809
GTEx:  ENSG00000144381 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10809
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI173104

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-14
    Type: Initial release