8U0F | pdb_00008u0f

Bacterial fluorescent protein

PDB DOI: https://doi.org/10.2210/pdb8U0F/pdb

Classification: LUMINESCENT PROTEIN
Organism(s): Ceramium secundatum
Expression System: Ceramium secundatum
Mutation(s): No

Deposited: 2023-08-29 Released: 2024-09-04
Deposition Author(s): Gully, B.S., Rossjohn, J.
Funding Organization(s): Australian Research Council (ARC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.07 Å
R-Value Free:
0.251 (Depositor), 0.250 (DCC)
R-Value Work:
0.199 (Depositor), 0.200 (DCC)
R-Value Observed:
0.202 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Bacterial fluorescent protein

Gully, B.S., Rossjohn, J.

To be published.

Macromolecule Content

Total Structure Weight: 78.15 kDa
Atom Count: 5,748
Modeled Residue Count: 680
Deposited Residue Count: 680
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacterial fluorescent protein alpha	A [auth B], C [auth K]	164	Ceramium secundatum	Mutation(s): 0 Gene Names: cpeA
UniProt
Find proteins for Q1AH74 (Ceramium secundatum) Explore Q1AH74 Go to UniProtKB: Q1AH74
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1AH74
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacterial fluorescent protein beta	B [auth C], D [auth L]	176	Ceramium secundatum	Mutation(s): 0 Gene Names: cpeB
UniProt
Find proteins for Q1AH60 (Ceramium secundatum) Explore Q1AH60 Go to UniProtKB: Q1AH60
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1AH60
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PUB Query on PUB Download:Ideal Coordinates CCD File SDF format, chain L SDF format, chain G [auth C] MOL2 format, chain L MOL2 format, chain G [auth C] mmCIF format, chain L mmCIF format, chain G [auth C]	G [auth C], L	PHYCOUROBILIN C₃₃ H₄₂ N₄ O₆ KDCCOOGTVSRCHX-YYVBKQGDSA-N		Interactions Focus chain G [auth C] Focus chain L Interactions & Density Focus chain G [auth C] Focus chain L
CYC Query on CYC Download:Ideal Coordinates CCD File SDF format, chain N [auth L] SDF format, chain M [auth L] SDF format, chain K SDF format, chain J [auth K] SDF format, chain I [auth C] SDF format, chain H [auth C] SDF format, chain F [auth B] SDF format, chain E [auth B] MOL2 format, chain N [auth L] MOL2 format, chain M [auth L] MOL2 format, chain K MOL2 format, chain J [auth K] MOL2 format, chain I [auth C] MOL2 format, chain H [auth C] MOL2 format, chain F [auth B] MOL2 format, chain E [auth B] mmCIF format, chain N [auth L] mmCIF format, chain M [auth L] mmCIF format, chain K mmCIF format, chain J [auth K] mmCIF format, chain I [auth C] mmCIF format, chain H [auth C] mmCIF format, chain F [auth B] mmCIF format, chain E [auth B]	E [auth B] F [auth B] H [auth C] I [auth C] J [auth K] E [auth B], F [auth B], H [auth C], I [auth C], J [auth K], K, M [auth L], N [auth L]	PHYCOCYANOBILIN C₃₃ H₄₀ N₄ O₆ VXTXPYZGDQPMHK-GMXXPEQVSA-N		Interactions Focus chain E [auth B] Focus chain F [auth B] Focus chain H [auth C] Focus chain I [auth C] Focus chain J [auth K] Focus chain K Focus chain M [auth L] Focus chain N [auth L] Interactions & Density Focus chain E [auth B] Focus chain F [auth B] Focus chain H [auth C] Focus chain I [auth C] Focus chain J [auth K] Focus chain K Focus chain M [auth L] Focus chain N [auth L]