8U0B | pdb_00008u0b

Crystal structure of Lyssavirus rabies (Nishigahara strain) nucleoprotein in complex with phosphomimetic phosphoprotein S48E

PDB DOI: https://doi.org/10.2210/pdb8U0B/pdb

Classification: VIRAL PROTEIN
Organism(s): Lyssavirus rabies
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-08-28 Released: 2025-04-23
Deposition Author(s): Donnelly, C.M., Stewart, M., Forwood, J.K.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.215 (Depositor), 0.214 (DCC)
R-Value Work:
0.183 (Depositor), 0.184 (DCC)
R-Value Observed:
0.184 (Depositor)

Starting Model: experimental
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Literature

The Replication Function of Rabies Virus P Protein Is Regulated by a Novel Phosphorylation Site in the N-Terminal N Protein-Binding Region

Tudhope, E., Donnelly, C.M., Sethi, A., David, C., Williamson, N., Stewart, M., Forwood, J.K., Gooley, P.R., Moseley, G.W.

(2025) Viruses 17

DOI: https://doi.org/10.3390/v17081075

Macromolecule Content

Total Structure Weight: 58.56 kDa
Atom Count: 3,723
Modeled Residue Count: 425
Deposited Residue Count: 517
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoprotein,Nucleoprotein chimera	A	517	Lyssavirus rabies	Mutation(s): 0
UniProt
Find proteins for B9VMI2 (Rabies virus) Explore B9VMI2 Go to UniProtKB: B9VMI2
Find proteins for Q5NU29 (Rabies virus) Explore Q5NU29 Go to UniProtKB: Q5NU29
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	Q5NU29 B9VMI2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.215 (Depositor), 0.214 (DCC)
R-Value Work: 0.183 (Depositor), 0.184 (DCC)
R-Value Observed: 0.184 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.894	α = 90
b = 75.393	β = 90
c = 154.985	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing
Coot	model building

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-04-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-04-23
Type: Initial release
Version 1.1: 2025-08-20
Changes: Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.