8TSH

S. thermodepolymerans KpsMT(E151Q)-KpsE in complex with ATP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular insights into capsular polysaccharide secretion.

Kuklewicz, J.Zimmer, J.

(2024) Nature 628: 901-909

  • DOI: https://doi.org/10.1038/s41586-024-07248-9
  • Primary Citation of Related Structures:  
    8TSH, 8TSI, 8TSL, 8TSW, 8TT3, 8TUN

  • PubMed Abstract: 

    Capsular polysaccharides (CPSs) fortify the cell boundaries of many commensal and pathogenic bacteria 1 . Through the ABC-transporter-dependent biosynthesis pathway, CPSs are synthesized intracellularly on a lipid anchor and secreted across the cell envelope by the KpsMT ABC transporter associated with the KpsE and KpsD subunits 1,2 . Here we use structural and functional studies to uncover crucial steps of CPS secretion in Gram-negative bacteria. We show that KpsMT has broad substrate specificity and is sufficient for the translocation of CPSs across the inner bacterial membrane, and we determine the cell surface organization and localization of CPSs using super-resolution fluorescence microscopy. Cryo-electron microscopy analyses of the KpsMT-KpsE complex in six different states reveal a KpsE-encaged ABC transporter, rigid-body conformational rearrangements of KpsMT during ATP hydrolysis and recognition of a glycolipid inside a membrane-exposed electropositive canyon. In vivo CPS secretion assays underscore the functional importance of canyon-lining basic residues. Combined, our analyses suggest a molecular model of CPS secretion by ABC transporters.


  • Organizational Affiliation

    Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter ATP-binding protein
A, B
234Caldimonas thermodepolymeransMutation(s): 1 
Gene Names: C1702_11080
Membrane Entity: Yes 
UniProt
Find proteins for A0A2S5T4B3 (Caldimonas thermodepolymerans)
Explore A0A2S5T4B3 
Go to UniProtKB:  A0A2S5T4B3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2S5T4B3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transport permease protein
C, D
274Caldimonas thermodepolymeransMutation(s): 0 
Gene Names: C1702_11075
Membrane Entity: Yes 
UniProt
Find proteins for A0A2S5T447 (Caldimonas thermodepolymerans)
Explore A0A2S5T447 
Go to UniProtKB:  A0A2S5T447
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2S5T447
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Capsular biosynthesis protein
E, F, G, H, I
E, F, G, H, I, J, K, L
390Caldimonas thermodepolymeransMutation(s): 0 
Gene Names: C1702_11085
Membrane Entity: Yes 
UniProt
Find proteins for A0A2S5T4A0 (Caldimonas thermodepolymerans)
Explore A0A2S5T4A0 
Go to UniProtKB:  A0A2S5T4A0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2S5T4A0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM144130

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-17
    Type: Initial release
  • Version 1.1: 2024-05-08
    Changes: Database references
  • Version 1.2: 2024-10-30
    Changes: Data collection, Structure summary