8TEA | pdb_00008tea

HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8TEA

This is version 1.2 of the entry. See complete history

Literature

Single-cell analysis of memory B cells from top neutralizers reveals multiple sites of vulnerability within HCMV Trimer and Pentamer.

Zehner, M.Alt, M.Ashurov, A.Goldsmith, J.A.Spies, R.Weiler, N.Lerma, J.Gieselmann, L.Stohr, D.Gruell, H.Schultz, E.P.Kreer, C.Schlachter, L.Janicki, H.Laib Sampaio, K.Stegmann, C.Nemetchek, M.D.Dahling, S.Ullrich, L.Dittmer, U.Witzke, O.Koch, M.Ryckman, B.J.Lotfi, R.McLellan, J.S.Krawczyk, A.Sinzger, C.Klein, F.

(2023) Immunity 56: 2602-2620.e10

  • DOI: https://doi.org/10.1016/j.immuni.2023.10.009
  • Primary Citation Related Structures: 
    8TCO, 8TEA

  • PubMed Abstract: 

    Human cytomegalovirus (HCMV) can cause severe diseases in fetuses, newborns, and immunocompromised individuals. Currently, no vaccines are approved, and treatment options are limited. Here, we analyzed the human B cell response of four HCMV top neutralizers from a cohort of 9,000 individuals. By single-cell analyses of memory B cells targeting the pentameric and trimeric HCMV surface complexes, we identified vulnerable sites on the shared gH/gL subunits as well as complex-specific subunits UL 128/130/131A and gO. Using high-resolution cryogenic electron microscopy, we revealed the structural basis of the neutralization mechanisms of antibodies targeting various binding sites. Moreover, we identified highly potent antibodies that neutralized a broad spectrum of HCMV strains, including primary clinical isolates, that outperform known antibodies used in clinical trials. Our study provides a deep understanding of the mechanisms of HCMV neutralization and identifies promising antibody candidates to prevent and treat HCMV infection.


  • Organizational Affiliation
    • Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany. Electronic address: matthias.zehner@uk-koeln.de.

Macromolecule Content 

  • Total Structure Weight: 153.86 kDa 
  • Atom Count: 6,054 
  • Modeled Residue Count: 780 
  • Deposited Residue Count: 1,401 
  • Unique protein chains: 7

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Envelope protein UL128A [auth C]163Human betaherpesvirus 5Mutation(s): 0 
Gene Names: UL128
UniProt
Find proteins for P16837 (Human cytomegalovirus (strain AD169))
Explore P16837 
Go to UniProtKB:  P16837
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16837
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Envelope glycoprotein UL130B [auth D]208Human betaherpesvirus 5Mutation(s): 0 
Gene Names: UL130HHV5wtgp111
UniProt
Find proteins for P16772 (Human cytomegalovirus (strain AD169))
Explore P16772 
Go to UniProtKB:  P16772
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16772
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
UL131AC [auth E]130Human betaherpesvirus 5Mutation(s): 0 
UniProt
Find proteins for Q38M12 (Human cytomegalovirus)
Explore Q38M12 
Go to UniProtKB:  Q38M12
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ38M12
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
CS2pt1p2_A10L Fab light chainD [auth G]216Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
CS2pt1p2_A10L Fab heavy chainE [auth H]243Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
CS3pt1p4_C1L Fab heavy chain223Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
CS3pt1p4_C1L Fab light chainG [auth I]218Homo sapiensMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-09
    Type: Initial release
  • Version 1.1: 2024-08-14
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2024-10-09
    Changes: Data collection, Structure summary