8T3P

Crystal structure of MonC1 (a flavin-dependent monooxygenase)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.184 

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This is version 1.0 of the entry. See complete history


Literature

Triepoxide formation by a flavin-dependent monooxygenase in monensin biosynthesis.

Wang, Q.Liu, N.Deng, Y.Guan, Y.Xiao, H.Nitka, T.A.Yang, H.Yadav, A.Vukovic, L.Mathews, I.I.Chen, X.Kim, C.Y.

(2023) Nat Commun 14: 6273-6273

  • DOI: https://doi.org/10.1038/s41467-023-41889-0
  • Primary Citation of Related Structures:  
    8T3P

  • PubMed Abstract: 

    Monensin A is a prototypical natural polyether polyketide antibiotic. It acts by binding a metal cation and facilitating its transport across the cell membrane. Biosynthesis of monensin A involves construction of a polyene polyketide backbone, subsequent epoxidation of the alkenes, and, lastly, formation of cyclic ethers via epoxide-opening cyclization. MonCI, a flavin-dependent monooxygenase, is thought to transform all three alkenes in the intermediate polyketide premonensin A into epoxides. Our crystallographic study has revealed that MonCI's exquisite stereocontrol is due to the preorganization of the active site residues which allows only one specific face of the alkene to approach the reactive C(4a)-hydroperoxyflavin moiety. Furthermore, MonCI has an unusually large substrate-binding cavity that can accommodate premonensin A in an extended or folded conformation which allows any of the three alkenes to be placed next to C(4a)-hydroperoxyflavin. MonCI, with its ability to perform multiple epoxidations on the same substrate in a stereospecific manner, demonstrates the extraordinary versatility of the flavin-dependent monooxygenase family of enzymes.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, The University of Texas at El Paso, 500 West University Avenue, El Paso, TX, 79968, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MonCI
A, B
512Streptomyces virginiaeMutation(s): 0 
Gene Names: monC1
UniProt
Find proteins for Q846W9 (Streptomyces virginiae)
Explore Q846W9 
Go to UniProtKB:  Q846W9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ846W9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.184 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.153α = 90
b = 52.353β = 93.6
c = 141.561γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
SHELXDEphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United StatesDE-AC02-76SF00515
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP30GM133894

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-08
    Type: Initial release