Structure of Shiga toxin 2 A1 subunit with peptides that bind at the ribosome binding site and inhibit activity
Rudolph, M.J., Li, X.P.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Shiga-like toxin 2 subunit A | 251 | Escherichia coli O104:H4 | Mutation(s): 0  Gene Names: stxA2, stx2A, L0103 EC: 3.2.2.22 | ||
UniProt | |||||
Find proteins for P09385 (Escherichia phage 933W) Explore P09385  Go to UniProtKB:  P09385 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09385 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
P stalk peptide P8 | C [auth P], D [auth Q] | 6 | Escherichia coli | Mutation(s): 0  | |
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
2PE Query on 2PE | E [auth A], F [auth A] | NONAETHYLENE GLYCOL C18 H38 O10 YZUUTMGDONTGTN-UHFFFAOYSA-N | |||
PO4 Query on PO4 | I [auth A], J [auth A], K [auth A], N [auth B], O [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
EDO Query on EDO | G [auth A], H [auth A], M [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | L [auth A], P [auth B], Q [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 102.349 | α = 90 |
b = 102.349 | β = 90 |
c = 92.891 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data scaling |
HKL-2000 | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 1R01AI141635-01A1 |