8SW9

Plasmodium falciparum M17 (A460S) mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.237 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Characterisation of a novel antimalarial agent targeting haemaglobin digestion that shows cross-species reactivity and excellent in vivo properties.

de Koning-Ward, T.F.Drinkwater, N.Edgar, R.C.S.McGowan, S.Scammells, P.J.

(2024) mBio 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Leucine aminopeptidase
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
528Plasmodium falciparumMutation(s): 4 
Gene Names: LAPPF3D7_1446200
EC: 3.4.11.1 (PDB Primary Data), 3.4.13 (PDB Primary Data)
UniProt
Find proteins for Q8IL11 (Plasmodium falciparum (isolate 3D7))
Explore Q8IL11 
Go to UniProtKB:  Q8IL11
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IL11
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
1PE
Query on 1PE

Download Ideal Coordinates CCD File 
CA [auth C]
CB [auth G]
DA [auth C]
DB [auth G]
EA [auth C]
CA [auth C],
CB [auth G],
DA [auth C],
DB [auth G],
EA [auth C],
EB [auth G],
GC [auth L],
JB [auth H],
KA [auth D],
LA [auth D],
MA [auth D],
R [auth A],
RA [auth E],
S [auth A],
SA [auth E],
TB [auth J],
X [auth B],
XA [auth F],
YB [auth K],
ZB [auth K]
PENTAETHYLENE GLYCOL
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AC [auth K]
BA [auth C]
BB [auth G]
BC [auth L]
FA [auth C]
AC [auth K],
BA [auth C],
BB [auth G],
BC [auth L],
FA [auth C],
FB [auth G],
FC [auth L],
JA [auth D],
KB [auth H],
OB [auth I],
P [auth A],
PB [auth I],
Q [auth A],
QA [auth E],
TA [auth F],
UB [auth J],
W [auth B]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AB [auth G]
CC [auth L]
DC [auth L]
GA [auth D]
GB [auth H]
AB [auth G],
CC [auth L],
DC [auth L],
GA [auth D],
GB [auth H],
HA [auth D],
HB [auth H],
LB [auth I],
M [auth A],
MB [auth I],
N [auth A],
NA [auth E],
OA [auth E],
QB [auth J],
RB [auth J],
U [auth B],
UA [auth F],
V [auth B],
VA [auth F],
VB [auth K],
WB [auth K],
Y [auth C],
Z [auth C],
ZA [auth G]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
CO3
Query on CO3

Download Ideal Coordinates CCD File 
AA [auth C]
EC [auth L]
IA [auth D]
IB [auth H]
NB [auth I]
AA [auth C],
EC [auth L],
IA [auth D],
IB [auth H],
NB [auth I],
O [auth A],
PA [auth E],
SB [auth J],
T [auth B],
WA [auth F],
XB [auth K],
YA [auth G]
CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.237 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 174.335α = 90
b = 176.725β = 90
c = 225.21γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)Australia1185354

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-24
    Type: Initial release