Crystal structure of DEAD-box RNA helicase DDX3X in complex with ADP at pre-unwound state
Song, H., Ji, X.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ATP-dependent RNA helicase DDX3X | 476 | Homo sapiens | Mutation(s): 0  Gene Names: DDX3X, DBX, DDX3 EC: 3.6.4.13 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O00571 (Homo sapiens) Explore O00571  Go to UniProtKB:  O00571 | |||||
PHAROS:  O00571 GTEx:  ENSG00000215301  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O00571 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (28-MER) | 28 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP (Subject of Investigation/LOI) Query on ADP | E [auth A], G [auth B] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
EDO Query on EDO | H [auth C], J [auth D], K [auth D], L [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | F [auth A], I [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.611 | α = 90 |
b = 68.611 | β = 90 |
c = 213.878 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
SCALEPACK | data scaling |
DENZO | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | Intramural Research Program |