Download MendeleyBAM orchestrates OMP biogenesis using a beta-templating mechanism
Wu, R., Ryoo, D., Kuo, K.M., Gumbart, J.C., Noinaj, N.To be published.
8SQA
The cryo-EM structure of the EcBAM/EspP(beta8-12) complex
- PDB DOI: https://doi.org/10.2210/pdb8SQA/pdb
- EM Map EMD-40700: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Escherichia coli, Escherichia coli O157
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Membrane Protein: Yes PDBTM
- Deposited: 2023-05-04 Released: 2024-05-08
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 4.20 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane protein assembly factor BamA | 786 | Escherichia coli | Mutation(s): 0 Gene Names: bamA Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P0A940 (Escherichia coli (strain K12)) Explore P0A940 Go to UniProtKB: P0A940 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A940 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane protein assembly factor BamB | 372 | Escherichia coli | Mutation(s): 0 Gene Names: bamB, yfgL, b2512, JW2496 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P77774 (Escherichia coli (strain K12)) Explore P77774 Go to UniProtKB: P77774 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P77774 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane protein assembly factor BamC | 319 | Escherichia coli | Mutation(s): 0 Gene Names: bamC Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P0A903 (Escherichia coli (strain K12)) Explore P0A903 Go to UniProtKB: P0A903 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A903 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane protein assembly factor BamD | 225 | Escherichia coli | Mutation(s): 0 Gene Names: bamD Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P0AC02 (Escherichia coli (strain K12)) Explore P0AC02 Go to UniProtKB: P0AC02 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0AC02 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane protein assembly factor BamE | 93 | Escherichia coli | Mutation(s): 0 Gene Names: bamE, smpA, smpA_1, smpA_2 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P0A937 (Escherichia coli (strain K12)) Explore P0A937 Go to UniProtKB: P0A937 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A937 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Maltose/maltodextrin-binding periplasmic protein,Autotransporter protein EspP translocator | 551 | Escherichia coli O157 | Mutation(s): 0 Gene Names: malE, Z5632, ECs5017, espP, L7020, ECO57PM78 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9 Go to UniProtKB: P0AEX9 | |||||
Find proteins for O32591 (Escherichia coli) Explore O32591 Go to UniProtKB: O32591 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | O32591P0AEX9 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 4.20 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.18rc1_3777: |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-05-08 Deposition Author(s): Wu, R., Noinaj, N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | 1R01GM127884 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | 1R01GM127896 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | 1R01GM123169 |
Revision History (Full details and data files)
- Version 1.0: 2024-05-08
Type: Initial release
