8SKZ | pdb_00008skz

Deposited: 2023-04-20 Released: 2024-11-20
Deposition Author(s): Nartey, W., Williams, G.J.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-dependent DNA helicase DDM1,Lymphoid-specific helicase chimera	A	821	Arabidopsis thaliana, Homo sapiens	Mutation(s): 0 Gene Names: DDM1, HELLS EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRZ9 (Homo sapiens) Explore Q9NRZ9 Go to UniProtKB: Q9NRZ9
PHAROS: Q9NRZ9 GTEx: ENSG00000119969
Find proteins for Q9XFH4 (Arabidopsis thaliana) Explore Q9XFH4 Go to UniProtKB: Q9XFH4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	Q9NRZ9 Q9XFH4
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Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H3.2	B, E	136	Xenopus laevis	Mutation(s): 1
UniProt
Find proteins for P84233 (Xenopus laevis) Explore P84233 Go to UniProtKB: P84233
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P84233
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Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H2A	C, G	133	Xenopus laevis	Mutation(s): 0 Gene Names: h2ac14.L
UniProt
Find proteins for P06897 (Xenopus laevis) Explore P06897 Go to UniProtKB: P06897
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P06897
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Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H2B 1.1	D, H	123	Xenopus laevis	Mutation(s): 1
UniProt
Find proteins for P02281 (Xenopus laevis) Explore P02281 Go to UniProtKB: P02281
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02281
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H4	F, I	110	Xenopus laevis	Mutation(s): 0 Gene Names: LOC121398084
UniProt
Find proteins for A0A8J1LTD2 (Xenopus laevis) Explore A0A8J1LTD2 Go to UniProtKB: A0A8J1LTD2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A8J1LTD2
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 6
DNA (192-MER)	J	192	Homo sapiens
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 7
DNA (192-MER)	K	192	Homo sapiens
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download:Ideal Coordinates CCD File SDF format, chain L [auth A] MOL2 format, chain L [auth A] mmCIF format, chain L [auth A]	L [auth A]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain L [auth A] Interactions & Density Focus chain L [auth A]
BEF (Subject of Investigation/LOI) Query on BEF Download:Ideal Coordinates CCD File SDF format, chain M [auth A] MOL2 format, chain M [auth A] mmCIF format, chain M [auth A]	M [auth A]	BERYLLIUM TRIFLUORIDE ION Be F₃ OGIAHMCCNXDTIE-UHFFFAOYSA-K		Interactions Focus chain M [auth A] Interactions & Density Focus chain M [auth A]