Crystal structure of Zn2+ bound calprotectin
Perera, Y.R., Nassif, A.R., Garcia, V., Guillen, R.M., Chazin, W.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein S100-A8 | 88 | Homo sapiens | Mutation(s): 4  Gene Names: S100A8, CAGA, CFAG, MRP8 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P05109 (Homo sapiens) Explore P05109  Go to UniProtKB:  P05109 | |||||
PHAROS:  P05109 GTEx:  ENSG00000143546  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05109 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein S100-A9 | 99 | Homo sapiens | Mutation(s): 2  Gene Names: S100A9, CAGB, CFAG, MRP14 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06702 (Homo sapiens) Explore P06702  Go to UniProtKB:  P06702 | |||||
PHAROS:  P06702 GTEx:  ENSG00000163220  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06702 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
2PE Query on 2PE | G [auth A], J [auth B] | NONAETHYLENE GLYCOL C18 H38 O10 YZUUTMGDONTGTN-UHFFFAOYSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | K [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CA Query on CA | E [auth A] F [auth A] H [auth B] I [auth B] L [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 58.436 | α = 90 |
b = 76.935 | β = 90 |
c = 106.793 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
Coot | model building |
PHENIX | phasing |
HKL-2000 | data reduction |
XDS | data scaling |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 AI127793 |
National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD) | United States | AI101171 |