8SGX

Leishmania tarentolae propionyl-CoA carboxylase (alpha-4-beta-6)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 10.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

CryoEM reveals oligomeric isomers of a multienzyme complex and assembly mechanics.

Lee, J.K.J.Liu, Y.T.Hu, J.J.Aphasizheva, I.Aphasizhev, R.Zhou, Z.H.

(2023) J Struct Biol X 7: 100088-100088

  • DOI: https://doi.org/10.1016/j.yjsbx.2023.100088
  • Primary Citation of Related Structures:  
    8SGX, 8SGY, 8SGZ

  • PubMed Abstract: 

    Propionyl-CoA carboxylase (PCC) is a multienzyme complex consisting of up to six α-subunits and six β-subunits. Belonging to a metabolic pathway converging on the citric acid cycle, it is present in most forms of life and irregularities in its assembly lead to serious illness in humans, known as propionic acidemia. Here, we report the cryogenic electron microscopy (cryoEM) structures and assembly of different oligomeric isomers of endogenous PCC from the parasitic protozoan Leishmania tarentolae (LtPCC). These structures and their statistical distribution reveal the mechanics of PCC assembly and disassembly at equilibrium. We show that, in solution, endogenous LtPCC β-subunits form stable homohexamers, to which different numbers of α-subunits attach. Sorting LtPCC particles into seven classes (i.e., oligomeric formulae α 0 β 6 , α 1 β 6 , α 2 β 6 , α 3 β 6 , α 4 β 6 , α 5 β 6 , α 6 β 6 ) enables formulation of a model for PCC assembly. Our results suggest how multimerization regulates PCC enzymatic activity and showcase the utility of cryoEM in revealing the statistical mechanics of reaction pathways.


  • Organizational Affiliation

    Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles (UCLA), Los Angeles, CA 90095, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Propionyl-coa carboxylase beta chain, putative489Leishmania tarentolaeMutation(s): 0 
UniProt
Find proteins for A0A640KR17 (Leishmania tarentolae)
Explore A0A640KR17 
Go to UniProtKB:  A0A640KR17
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A640KR17
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
propionyl-CoA carboxylaseG [auth S],
H [auth V],
I [auth X],
J [auth Z]
657Leishmania tarentolaeMutation(s): 0 
EC: 6.4.1.3
UniProt
Find proteins for A0A640KC69 (Leishmania tarentolae)
Explore A0A640KC69 
Go to UniProtKB:  A0A640KC69
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A640KC69
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 10.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2_4158:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM071940
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI101057

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-17
    Type: Initial release
  • Version 1.1: 2024-06-19
    Changes: Data collection